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News:
Bioconductor Package Download Rate Limitation (HTTP 429)
downloads
http429
http
Bioconductor
10 months ago
shepherl
4.1k
0
votes
2
replies
2.5k
views
R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw
rtracklayer
Windows
http
3.5 years ago
sla
• 0
1
vote
5
replies
6.1k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 4.5 years ago by
Michael Lawrence
★ 11k • written 4.5 years ago by
Søren
• 0
4
votes
2
replies
1.5k
views
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons
tcga
gdc
rest
http
updated 6.3 years ago by
Sean Davis
21k • written 6.3 years ago by
mk
▴ 20
0
votes
4
replies
2.2k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz
gviz-package
rtracklayer
http
7.3 years ago
enricoferrero
▴ 680
3
votes
6
replies
3.5k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 7.6 years ago by
Wolfgang Huber
★ 13k • written 7.6 years ago by
Bernd Klaus
▴ 610
2
votes
7
replies
2.3k
views
Bioconductor Installation may be insecure against man-in-the-middle attacks
security
http
source
installation
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
will.townes
• 0
7 results • Page
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Comment: Heatmap of rnaseq data with z-score scale
by
Paul Harrison
▴ 110
There can be considerable differences between datasets just due to different handling, sequencing method, batch effects, etc etc, and this …
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
ATpoint
★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr
by
Gordon Smyth
52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
by
Gordon Smyth
52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Votes
Comment: Heatmap of rnaseq data with z-score scale
Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
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