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arrayexpress xml rcurl http EBI

updated 3.7 years ago by Wolfgang Huber 13k • written 3.7 years ago by Bernd Klaus ▴ 590

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Answer: No counts, just fold change data by swbarnes2 ▴ 770

> in order to connect the differentially expressed genes to pathways, > filter what is relevant and further analyse the network. I thin…

Comment: How to do annotation with Limma by James W. MacDonald 57k

I should also point out that the fid isn't really the probe ID. For this array (and IIRC all of the random-primer arrays), there really isn…

Comment: How to do annotation with Limma by James W. MacDonald 57k

The probe IDs are different from the probeset IDs, and are usually not of interest. Each probeset is made up of 4 or more probes (depending…

Comment: How to do annotation with Limma by 1gagoogag1 • 0

Thank you so much for your explanation! I have a question about how can I get the probeIDs and are they different from the probe set ID?

Comment: How to select summit size for histone ChiP-Seq in Diffbind by millerh1 • 0

Without the `summits` parameter, I usually find a very strong relationship between the `FDR` and `width` for peaks, especially for diffuse …

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Answer: How to do annotation with Limma

Final List of Deprecated Packages for Bioc3.13

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