Bioconductor Xml

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867

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deseq2 libxml xml

updated 2.0 years ago by Michael Love 40k • written 2.0 years ago by Fátima • 0

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921

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mart martconfigurator biomaRt xml

updated 2.5 years ago by Mike Smith ★ 6.0k • written 2.5 years ago by anhvo711 • 0

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967

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deseq2 bioconductor windows xml installation

updated 2.8 years ago by Michael Love 40k • written 2.8 years ago by sarah3 • 0

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1.8k

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flowworkspace xml R flowjo

updated 3.5 years ago by Abby Moore • 0 • written 6.2 years ago by Ekaterina Terskikh ▴ 10

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836

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pathview kegg xml

updated 3.9 years ago by Luo Weijun ★ 1.6k • written 3.9 years ago by anamaria ▴ 10

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2.2k

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arrayexpress xml rcurl http EBI

updated 5.7 years ago by Wolfgang Huber 13k • written 5.7 years ago by Bernd Klaus ▴ 610

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684

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tkWidgets xml kegggraph

updated 6.1 years ago by James W. MacDonald 63k • written 6.1 years ago by urwaCFC • 0

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2.7k

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graph kegggraph xml

updated 6.1 years ago by Robert Castelo ★ 3.0k • written 6.1 years ago by urwaCFC • 0

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4.4k

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genomicfeatures xml libxml2

6.3 years ago • updated 6.2 years ago JunLVI ▴ 40

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2.2k

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microarrays xml RCurl libxml2 libcurl

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by farahqureshi5 • 0

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2.8k

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pathview download.kegg() xml

updated 7.7 years ago by Luo Weijun ★ 1.6k • written 7.8 years ago by lucmoitinho • 0

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2.1k

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xml install

7.8 years ago jason.harris • 0

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7.4k

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genomicfeatures xml loadnamespace

8.1 years ago greg.mulhearn • 0

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2.5k

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software error rcytoscape xml

updated 8.5 years ago by drsuuzzz • 0 • written 8.6 years ago by alessandro brozzi ▴ 120

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6.4k

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Install cummerbund Rcurl xml

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by dnajuice ▴ 20

15 results • Page 1 of 1

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Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …

Votes

Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

Comment: Question on constructing design matrix and defining contrasts for analysis

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