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902
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Answer: Answer: Reducing dataset size to improve run time for fitGAM in tradeSeq
20 months ago Koen Van den Berge ▴ 180
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0
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718
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Answer: Answer: stageR p-adj values of zero
3.1 years ago Koen Van den Berge ▴ 180
1
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0
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9.5k
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Comment: C: Biomart error when updating to R 4.0.2
4.1 years ago Koen Van den Berge ▴ 180
3
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9
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4.3k
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AnnotationHub corrupt database
annotationhub
updated 5.7 years ago by 4.1k • written 9.3 years ago by ▴ 180
0
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0
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989
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Answer: A: stageR with input from DRIMSeq
5.7 years ago Koen Van den Berge ▴ 180
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0
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1.9k
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Comment: C: stageR: Error in stageWiseAdjustment
5.8 years ago Koen Van den Berge ▴ 180
0
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0
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1.9k
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Comment: C: stageR: Error in stageWiseAdjustment
5.8 years ago Koen Van den Berge ▴ 180
1
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0
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1.5k
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Comment: C: Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
5.8 years ago Koen Van den Berge ▴ 180
3
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2
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1.5k
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Answer: A: Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
5.9 years ago Koen Van den Berge ▴ 180
0
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1
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2.8k
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Comment: C: ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like t
6.3 years ago Koen Van den Berge ▴ 180
2
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0
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2.8k
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Comment: C: ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like t
6.3 years ago Koen Van den Berge ▴ 180
1
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1
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2.0k
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Answer: A: stageR NA in getAdjustedPValues() (method=dtu)
6.4 years ago Koen Van den Berge ▴ 180
0
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2
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2.0k
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Comment: C: stageR NA in getAdjustedPValues() (method=dtu)
6.4 years ago Koen Van den Berge ▴ 180
0
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1
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2.0k
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Comment: C: stageR NA in getAdjustedPValues() (method=dtu)
6.4 years ago Koen Van den Berge ▴ 180
0
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1
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936
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Comment: C: simultaneous testing in DESeq2
8.2 years ago Koen Van den Berge ▴ 180
1
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3
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936
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simultaneous testing in DESeq2
deseq2
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 180
2
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2
replies
1.1k
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variance-covariance matrix edgeR
edger
updated 8.3 years ago by 51k • written 8.3 years ago by ▴ 180
0
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1
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6.4k
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Comment: C: Hisat2 vs featureCounts summary statistics
8.5 years ago Koen Van den Berge ▴ 180
4
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5
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6.4k
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Hisat2 vs featureCounts summary statistics
featurecounts hisat2 rna-seq mapping
updated 8.5 years ago by ★ 3.6k • written 8.6 years ago by ▴ 180
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0
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6.4k
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Comment: C: Hisat2 vs featureCounts summary statistics
8.5 years ago Koen Van den Berge ▴ 180
0
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0
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1.2k
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Comment: C: bounded trended dispersion edgeR
8.7 years ago Koen Van den Berge ▴ 180
0
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1
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1.2k
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Comment: C: bounded trended dispersion edgeR
8.7 years ago Koen Van den Berge ▴ 180
3
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4
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1.2k
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bounded trended dispersion edgeR
edger
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 180
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0
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1.6k
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
8.9 years ago Koen Van den Berge ▴ 180
0
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1
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1.6k
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
8.9 years ago Koen Van den Berge ▴ 180
5
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5
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1.6k
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edgeR no residual degrees of freedom for a specific row of numbers in dispCoxReidInterpolateTagwise
edger rna-seq
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 180
0
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0
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4.3k
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Comment: C: AnnotationHub corrupt database
9.3 years ago Koen Van den Berge ▴ 180
0
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1
reply
5.6k
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Comment: C: convert S4 DataFrame of Rle objects to sparse matrix
9.6 years ago Koen Van den Berge ▴ 180
7
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7
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5.6k
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convert S4 DataFrame of Rle objects to sparse matrix
s4
updated 9.6 years ago by ★ 11k • written 9.6 years ago by ▴ 180
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0
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1.9k
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Comment: C: LIMMA similarity of contrast matrix, F test and topTable
10.4 years ago Koen Van den Berge ▴ 180
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2
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1.9k
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LIMMA similarity of contrast matrix, F test and topTable
GO GO
updated 10.4 years ago by 67k • written 10.4 years ago by ▴ 180
0
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0
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2.2k
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Comment: C: prior df estimation of estimateDisp function
10.8 years ago Koen Van den Berge ▴ 180
0
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2
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2.2k
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prior df estimation of estimateDisp function
PROcess PROcess
updated 10.8 years ago by 51k • written 10.8 years ago by ▴ 180
0
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1
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16k
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Answer: A: EdgeR LogCpm and LogFC values calculation
updated 10.8 years ago by 51k • written 10.8 years ago by ▴ 180
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0
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4.6k
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Comment: C: EdgeR LogCpm and LogFC values calculation
10.8 years ago Koen Van den Berge ▴ 180
0
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2
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4.6k
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EdgeR LogCpm and LogFC values calculation
edgeR edgeR
updated 10.8 years ago by ▴ 130 • written 10.8 years ago by ▴ 180
36 results • Page 1 of 1
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