Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hisat2
•
reset
1
vote
1
reply
382
views
HISAT2 mapping
hisat2
results
updated 8 months ago by
ATpoint
★ 3.6k • written 8 months ago by
ali
• 0
0
votes
0
replies
1.1k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
3.1 years ago
ra711
• 0
0
votes
0
replies
1.6k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
5.8 years ago • updated 5.6 years ago
Nancy
▴ 10
1
vote
1
reply
1.2k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 6.0 years ago by
k.vitting.seerup
▴ 120 • written 6.0 years ago by
amy16
• 0
0
votes
1
reply
957
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
6.0 years ago
zoukai3412085
• 0
4
votes
5
replies
5.7k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 7.5 years ago by
Wei Shi
★ 3.5k • written 7.6 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl down???
by
James W. MacDonald
64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected
by
Aastha Kapoor
• 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Comment: Timely differentially expressed genes
by
triZZla
• 0
Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…
Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
by
ATpoint
★ 3.6k
What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]
Comment: Problem loading HDF5Array in R 4.3.2
by
Mike Smith
★ 6.2k
Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
Awards
• All
Scholar
to
Mike Smith
★ 6.2k
Scholar
to
Hervé Pagès
16k
Popular Question
to
bas_work
▴ 20
Popular Question
to
James W. MacDonald
64k
Popular Question
to
A
▴ 40
Locations
• All
United States,
1 minute ago
India,
2 minutes ago
United States,
2 minutes ago
Germany,
6 minutes ago
Wageningen University, Wageningen, the Netherlands,
10 minutes ago
Traffic: 946 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6