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hisat2
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HISAT2 mapping
hisat2
results
updated 2.1 years ago by
ATpoint
★ 4.8k • written 2.1 years ago by
ali
• 0
0
votes
0
replies
1.8k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
4.6 years ago
ra711
• 0
0
votes
0
replies
2.2k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.2 years ago • updated 7.0 years ago
Nancy
▴ 10
1
vote
1
reply
1.7k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 7.5 years ago by
k.vitting.seerup
▴ 120 • written 7.5 years ago by
amy16
• 0
0
votes
1
reply
1.4k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
7.5 years ago
zoukai3412085
• 0
4
votes
5
replies
6.8k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 9.0 years ago by
Wei Shi
★ 3.6k • written 9.0 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
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Comment: What happened to the Joost2016 dataset
by
shepherl
4.1k
what package is this function from and what did it do when it was working?
Comment: limma correction for tumor purity
by
gabriella.jacobson-eisenberg
▴ 20
Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…
Comment: Best tximport quant.genes.sf
by
ATpoint
★ 4.8k
The tx in the name stands for transcript. Gene level needs no tximport. You could simply use the standard output from salmon and do what th…
Comment: EuroBioC2023 abstract submission is open!
by
arden
• 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis
by
GA
▴ 10
Thank you!
Votes
Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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