Bioconductor S4

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1.5k

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DBI S4 Biobase

updated 2.7 years ago by Hervé Pagès 16k • written 2.7 years ago by sandmann.t ▴ 70

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1.3k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by lklei001 • 0

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1.1k

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calcium imaging imaging s4

updated 5.1 years ago by shepherl 4.1k • written 5.1 years ago by muad.abdelhay ▴ 10

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914

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class S4

updated 5.2 years ago by Hervé Pagès 16k • written 5.2 years ago by Teun van den Brand • 0

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1.4k

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s4 dataframe left_join merge

updated 6.1 years ago by Hervé Pagès 16k • written 6.1 years ago by Michael Steinbaugh ▴ 90

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1.4k

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s4 generic

updated 6.3 years ago by Marcel Ramos 700 • written 6.3 years ago by Michael Steinbaugh ▴ 90

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922

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S4 deseq2

updated 6.3 years ago by swbarnes2 ★ 1.4k • written 6.3 years ago by shintzen • 0

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1.5k

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s4 methods SummarizedExperiment

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by brendan.innes ▴ 20

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1.4k

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devtools S4 methods cache

6.5 years ago Michael Steinbaugh ▴ 90

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1.3k

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S4 packages

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by lukaszbednarz ▴ 10

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iranges integerlist s4

8.8 years ago Jurat Shahidin ▴ 80

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1.5k

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s4 coercion iranges integerlist

8.8 years ago jian_liangli • 0

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mclust s4vectors S4 as.matrix .FCS

8.9 years ago anara92 • 0

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12k

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genomicranges grangeslist granges s4

updated 3.1 years ago by Hervé Pagès 16k • written 8.9 years ago by richierocks ▴ 40

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rnbeads error as.vector(data) s4vectors s4

9.7 years ago schasse • 0

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6.0k

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updated 10.1 years ago by Michael Lawrence ★ 11k • written 10.1 years ago by Koen Van den Berge ▴ 180

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lumi S4

10.2 years ago Chi Hong • 0

17 results • Page 1 of 1

Recent ...

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Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Comment: cannot download atena annotation for human by Davide • 0

Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …

Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove by macdonaldfrench7286566 • 0

Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Kateřina • 0

I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!

Comment: GAlignments Cigar to GRanges by pineiroalejandro • 0

Wow, so easy! Thanks for your quick reply.

Votes

Answer: GAlignments Cigar to GRanges

When running contrasts, does it use normalized read counts?

Importing Salmon counts with tximport with host and virus genomes

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Scholar to Hervé Pagès 16k