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3.3k
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Comment: C: How to use GOseq without length bias
5.2 years ago b.nota ▴ 370
2
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1
reply
1.3k
views
limma::avereps for median?
limma
updated 6.1 years ago by 53k • written 6.1 years ago by ▴ 370
0
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0
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1.6k
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Comment: C: How to calculate average log2 CPM with batch effect?
7.2 years ago b.nota ▴ 370
3
votes
2
replies
1.6k
views
How to calculate average log2 CPM with batch effect?
edger limma cpm
updated 7.2 years ago by ★ 29k • written 7.2 years ago by ▴ 370
0
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0
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1.9k
views
Comment: C: File not found error when using dupRadar::analyzeDuprates
7.4 years ago b.nota ▴ 370
3
votes
4
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1.9k
views
File not found error when using dupRadar::analyzeDuprates
dupradar rsubread
updated 7.4 years ago by 53k • written 7.4 years ago by ▴ 370
0
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0
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1.9k
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Comment: C: File not found error when using dupRadar::analyzeDuprates
7.4 years ago b.nota ▴ 370
0
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0
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1.8k
views
Comment: C: Cannot retrieve DE genes from goana GO terms
7.4 years ago b.nota ▴ 370
3
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4
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1.8k
views
Cannot retrieve DE genes from goana GO terms
limma goana edger
updated 7.4 years ago by ★ 29k • written 7.4 years ago by ▴ 370
0
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0
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1.8k
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Comment: C: Cannot retrieve DE genes from goana GO terms
7.4 years ago b.nota ▴ 370
0
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0
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2.1k
views
Comment: C: limma roast results not in accordance with barcodeplot
7.6 years ago b.nota ▴ 370
2
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2
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2.1k
views
limma roast results not in accordance with barcodeplot
roast limma
7.6 years ago b.nota ▴ 370
0
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0
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6.1k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
7.6 years ago b.nota ▴ 370
0
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1
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6.1k
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Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
7.6 years ago b.nota ▴ 370
0
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2
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6.1k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
7.6 years ago b.nota ▴ 370
0
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1
reply
6.1k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
7.6 years ago b.nota ▴ 370
0
votes
9
replies
6.1k
views
What does "level" argument mean in groupGO function (cluster profiler)?
clusterprofiler go groupGO
updated 7.6 years ago by 68k • written 7.6 years ago by ▴ 370
0
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0
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2.4k
views
Comment: C: Compare groups of different RNAseq sets
7.6 years ago b.nota ▴ 370
2
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5
replies
2.4k
views
Compare groups of different RNAseq sets
batch effect limma
updated 7.6 years ago by 53k • written 7.6 years ago by ▴ 370
0
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1
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2.4k
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Comment: C: Compare groups of different RNAseq sets
7.6 years ago b.nota ▴ 370
0
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0
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1.3k
views
Comment: C: Limma model for paired and pool together
7.6 years ago b.nota ▴ 370
2
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4
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1.3k
views
Limma model for paired and pool together
limma design rnaseq
updated 7.6 years ago by ★ 7.9k • written 7.6 years ago by ▴ 370
0
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0
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3.6k
views
Comment: C: edgeR cpm() function with and without log2
7.7 years ago b.nota ▴ 370
6
votes
2
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3.6k
views
edgeR cpm() function with and without log2
edger cpm
updated 7.7 years ago by ★ 29k • written 7.7 years ago by ▴ 370
4
votes
5
replies
8.1k
views
Limma voom or trend?
limma voom limma-trend
updated 7.8 years ago by • 0 • written 8.9 years ago by ▴ 370
9
votes
8
replies
7.1k
views
Limma Voom produces many identical adjusted p-values
limma voom adjusted pvalue
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 370
0
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0
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7.1k
views
Comment: C: Limma Voom produces many identical adjusted p-values
7.9 years ago b.nota ▴ 370
0
votes
1
reply
7.1k
views
Comment: C: Limma Voom produces many identical adjusted p-values
7.9 years ago b.nota ▴ 370
0
votes
1
reply
7.1k
views
Comment: C: Limma Voom produces many identical adjusted p-values
7.9 years ago b.nota ▴ 370
0
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1
reply
2.0k
views
Comment: C: edgeR design between and within subjects
8.3 years ago b.nota ▴ 370
4
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4
replies
2.0k
views
edgeR design between and within subjects
edgeR design and contrast matrix
updated 8 months ago by • 0 • written 8.3 years ago by ▴ 370
0
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0
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2.8k
views
Answer: A: Getting Differentially Expressed Genes from GOSeq Categories
8.4 years ago b.nota ▴ 370
0
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0
replies
16k
views
Comment: C: converting fasta file into bam file
8.4 years ago b.nota ▴ 370
0
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0
replies
1.5k
views
Reactome_gene IDs are pathway IDs in biomaRt
biomart
8.4 years ago b.nota ▴ 370
0
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0
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3.2k
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Comment: C: featureCount and bam
8.4 years ago b.nota ▴ 370
0
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1
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3.2k
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Comment: C: featureCount and bam
8.4 years ago b.nota ▴ 370
0
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2
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2.5k
views
Comment: C: Nonspecific filtering of microarray data
8.5 years ago b.nota ▴ 370
0
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1
reply
2.5k
views
Comment: C: Nonspecific filtering of microarray data
8.5 years ago b.nota ▴ 370
0
votes
0
replies
2.3k
views
Answer: A: error in installing bioconductor
8.7 years ago b.nota ▴ 370
0
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0
replies
1.7k
views
Comment: C: unable to install bioconductor package
8.7 years ago b.nota ▴ 370
2
votes
0
replies
4.3k
views
Comment: C: plotting correlation between samples
8.8 years ago b.nota ▴ 370
0
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1
reply
2.8k
views
Comment: C: Removing batch effect from microarray data
8.8 years ago b.nota ▴ 370
0
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0
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8.0k
views
Comment: C: ClusterProfiler - How to : input file, groupGo, enrichGo
8.8 years ago b.nota ▴ 370
0
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1
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8.0k
views
Comment: C: ClusterProfiler - How to : input file, groupGo, enrichGo
8.8 years ago b.nota ▴ 370
2
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1
reply
2.0k
views
Answer: A: Question regarding best bioconductor package for RNA-seq
8.8 years ago b.nota ▴ 370
0
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1
reply
2.1k
views
heatmap.2 reorder branches
heatmap.2 hclust reorderfun
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 370
0
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1
reply
8.1k
views
Comment: C: Limma voom or trend?
8.9 years ago b.nota ▴ 370
0
votes
0
replies
3.3k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
8.9 years ago b.nota ▴ 370
0
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0
replies
3.3k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
8.9 years ago b.nota ▴ 370
0
votes
1
reply
3.3k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
8.9 years ago b.nota ▴ 370
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