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2.4k
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Comment: C: How to use GOseq without length bias
3.6 years ago b.nota ▴ 360
2
votes
1
reply
906
views
limma::avereps for median?
limma
updated 4.5 years ago by 50k • written 4.5 years ago by ▴ 360
0
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0
replies
979
views
Comment: C: How to calculate average log2 CPM with batch effect?
5.5 years ago b.nota ▴ 360
3
votes
2
replies
979
views
How to calculate average log2 CPM with batch effect?
edger limma cpm
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ▴ 360
0
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0
replies
1.4k
views
Comment: C: File not found error when using dupRadar::analyzeDuprates
5.7 years ago b.nota ▴ 360
3
votes
4
replies
1.4k
views
File not found error when using dupRadar::analyzeDuprates
dupradar rsubread
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 360
0
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0
replies
1.4k
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Comment: C: File not found error when using dupRadar::analyzeDuprates
5.7 years ago b.nota ▴ 360
0
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0
replies
1.3k
views
Comment: C: Cannot retrieve DE genes from goana GO terms
5.8 years ago b.nota ▴ 360
3
votes
4
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1.3k
views
Cannot retrieve DE genes from goana GO terms
limma goana edger
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 360
0
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0
replies
1.3k
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Comment: C: Cannot retrieve DE genes from goana GO terms
5.8 years ago b.nota ▴ 360
0
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0
replies
1.5k
views
Comment: C: limma roast results not in accordance with barcodeplot
6.0 years ago b.nota ▴ 360
2
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2
replies
1.5k
views
limma roast results not in accordance with barcodeplot
roast limma
6.0 years ago b.nota ▴ 360
0
votes
0
replies
4.3k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
6.0 years ago b.nota ▴ 360
0
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1
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4.3k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
6.0 years ago b.nota ▴ 360
0
votes
2
replies
4.3k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
6.0 years ago b.nota ▴ 360
0
votes
1
reply
4.3k
views
Comment: C: What does "level" argument mean in groupGO function (cluster profiler)?
6.0 years ago b.nota ▴ 360
0
votes
9
replies
4.3k
views
What does "level" argument mean in groupGO function (cluster profiler)?
clusterprofiler go groupGO
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 360
0
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0
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1.4k
views
Comment: C: Compare groups of different RNAseq sets
6.0 years ago b.nota ▴ 360
2
votes
5
replies
1.4k
views
Compare groups of different RNAseq sets
batch effect limma
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 360
0
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1
reply
1.4k
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Comment: C: Compare groups of different RNAseq sets
6.0 years ago b.nota ▴ 360
0
votes
0
replies
914
views
Comment: C: Limma model for paired and pool together
6.0 years ago b.nota ▴ 360
2
votes
4
replies
914
views
Limma model for paired and pool together
limma design rnaseq
updated 6.0 years ago by ★ 7.9k • written 6.0 years ago by ▴ 360
0
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0
replies
2.8k
views
Comment: C: edgeR cpm() function with and without log2
6.1 years ago b.nota ▴ 360
6
votes
2
replies
2.8k
views
edgeR cpm() function with and without log2
edger cpm
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 360
4
votes
5
replies
7.2k
views
Limma voom or trend?
limma voom limma-trend
updated 6.2 years ago by • 0 • written 7.2 years ago by ▴ 360
7
votes
8
replies
5.3k
views
Limma Voom produces many identical adjusted p-values
limma voom adjusted pvalue
updated 6.3 years ago by 50k • written 6.3 years ago by ▴ 360
0
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0
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5.3k
views
Comment: C: Limma Voom produces many identical adjusted p-values
6.3 years ago b.nota ▴ 360
0
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1
reply
5.3k
views
Comment: C: Limma Voom produces many identical adjusted p-values
6.3 years ago b.nota ▴ 360
0
votes
1
reply
5.3k
views
Comment: C: Limma Voom produces many identical adjusted p-values
6.3 years ago b.nota ▴ 360
0
votes
1
reply
1.4k
views
Comment: C: edgeR design between and within subjects
6.7 years ago b.nota ▴ 360
4
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3
replies
1.4k
views
edgeR design between and within subjects
edgeR design and contrast matrix
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 360
0
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0
replies
2.2k
views
Answer: A: Getting Differentially Expressed Genes from GOSeq Categories
6.8 years ago b.nota ▴ 360
0
votes
0
replies
13k
views
Comment: C: converting fasta file into bam file
6.8 years ago b.nota ▴ 360
0
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0
replies
1.1k
views
Reactome_gene IDs are pathway IDs in biomaRt
biomart
6.8 years ago b.nota ▴ 360
0
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0
replies
2.5k
views
Comment: C: featureCount and bam
6.8 years ago b.nota ▴ 360
0
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1
reply
2.5k
views
Comment: C: featureCount and bam
6.8 years ago b.nota ▴ 360
0
votes
2
replies
1.9k
views
Comment: C: Nonspecific filtering of microarray data
6.9 years ago b.nota ▴ 360
0
votes
1
reply
1.9k
views
Comment: C: Nonspecific filtering of microarray data
6.9 years ago b.nota ▴ 360
0
votes
0
replies
1.7k
views
Answer: A: error in installing bioconductor
7.1 years ago b.nota ▴ 360
0
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0
replies
1.4k
views
Comment: C: unable to install bioconductor package
7.1 years ago b.nota ▴ 360
2
votes
0
replies
3.1k
views
Comment: C: plotting correlation between samples
7.1 years ago b.nota ▴ 360
0
votes
1
reply
2.2k
views
Comment: C: Removing batch effect from microarray data
7.1 years ago b.nota ▴ 360
0
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0
replies
5.9k
views
Comment: C: ClusterProfiler - How to : input file, groupGo, enrichGo
7.1 years ago b.nota ▴ 360
0
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1
reply
5.9k
views
Comment: C: ClusterProfiler - How to : input file, groupGo, enrichGo
7.1 years ago b.nota ▴ 360
2
votes
1
reply
1.5k
views
Answer: A: Question regarding best bioconductor package for RNA-seq
7.2 years ago b.nota ▴ 360
0
votes
1
reply
1.7k
views
heatmap.2 reorder branches
heatmap.2 hclust reorderfun
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 360
0
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1
reply
7.2k
views
Comment: C: Limma voom or trend?
7.2 years ago b.nota ▴ 360
0
votes
0
replies
2.4k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
7.3 years ago b.nota ▴ 360
0
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0
replies
2.4k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
7.3 years ago b.nota ▴ 360
0
votes
1
reply
2.4k
views
Comment: C: GOseq package: Which genes are included in the "numDEInCat"?
7.3 years ago b.nota ▴ 360
144 results • Page 1 of 3
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