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goana
•
reset
0
votes
0
replies
467
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
4 months ago
Raito92
▴ 60
15
votes
18
replies
704
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 4 months ago by
Gordon Smyth
46k • written 4 months ago by
Raito92
▴ 60
1
vote
2
replies
344
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
11 months ago
Barista
• 0
5
votes
7
replies
714
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 2.3 years ago by
Gordon Smyth
46k • written 2.3 years ago by
Raito92
▴ 60
0
votes
3
replies
591
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 2.9 years ago by
Gordon Smyth
46k • written 2.9 years ago by
Ahdee
▴ 50
6
votes
10
replies
3.1k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 6 months ago by
Gordon Smyth
46k • written 3.1 years ago by
matrs
▴ 10
3
votes
4
replies
812
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 4.1 years ago by
Aaron Lun
★ 27k • written 4.1 years ago by
b.nota
▴ 360
0
votes
3
replies
1.6k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 4.5 years ago by
Gordon Smyth
46k • written 4.5 years ago by
jfreixas
• 0
0
votes
4
replies
2.2k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
4.8 years ago
emy_66
• 0
3
votes
2
replies
3.4k
views
No genes found in universe : goana error
edger
goana
gene ontology
4.9 years ago • updated 4.8 years ago
fawazfebin
▴ 50
0
votes
2
replies
859
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 5.1 years ago by
Gordon Smyth
46k • written 5.2 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
1.6k
views
Strange output from goana()
edger
goana
updated 5.5 years ago by
Gordon Smyth
46k • written 5.5 years ago by
cronanz
• 0
0
votes
4
replies
1.3k
views
need help with microarray GO enrichment using goana
goana
limma
updated 5.7 years ago by
Gordon Smyth
46k • written 5.7 years ago by
mat149
▴ 70
4
votes
3
replies
850
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 5.9 years ago by
James W. MacDonald
60k • written 5.9 years ago by
jhj89
▴ 10
13
votes
6
replies
5.2k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 7.1 years ago by
Gordon Smyth
46k • written 7.1 years ago by
carl.mann
▴ 20
15 results • Page
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Replies
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Comment: Error using ChAMP SVD analysis
by
CristEin
• 0
In fact, I found that the author may have caused the problem class(myNorm) %>% length() #equals 2 class(myNorm) == "data.…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
Oh sorry I missed the species. Yes they also match for chicken :-) (both being called "ENSGALT..."). The other is from NCBI
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Ok, have you looked cDNA fasta file for Chicken (maternal Broiler) Gallus gallus? I am using Kallisto for alignment and quantification. He…
Votes
Answer: Conversion of UniProt to Ensembl
DEXseq error unable to find an inherited method for function NSBS for signature CompressedIntegerList
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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