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goana
•
reset
0
votes
0
replies
2.2k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
18 months ago
Raito92
▴ 60
15
votes
18
replies
2.4k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 18 months ago by
Gordon Smyth
48k • written 18 months ago by
Raito92
▴ 60
1
vote
2
replies
689
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
2.1 years ago
Barista
• 0
5
votes
7
replies
1.6k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 3.4 years ago by
Gordon Smyth
48k • written 3.4 years ago by
Raito92
▴ 60
0
votes
3
replies
947
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 4.0 years ago by
Gordon Smyth
48k • written 4.0 years ago by
Ahdee
▴ 50
6
votes
10
replies
4.4k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 20 months ago by
Gordon Smyth
48k • written 4.2 years ago by
matrs
▴ 10
3
votes
4
replies
1.1k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
b.nota
▴ 360
0
votes
3
replies
2.2k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 5.6 years ago by
Gordon Smyth
48k • written 5.6 years ago by
jfreixas
• 0
0
votes
4
replies
2.7k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
5.9 years ago
emy_66
• 0
3
votes
2
replies
4.2k
views
No genes found in universe : goana error
edger
goana
gene ontology
6.0 years ago • updated 5.9 years ago
fawazfebin
▴ 60
0
votes
2
replies
1.1k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.2 years ago by
Gordon Smyth
48k • written 6.4 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
2.0k
views
Strange output from goana()
edger
goana
updated 6.6 years ago by
Gordon Smyth
48k • written 6.6 years ago by
cronanz
• 0
0
votes
4
replies
1.6k
views
need help with microarray GO enrichment using goana
goana
limma
updated 6.9 years ago by
Gordon Smyth
48k • written 6.9 years ago by
mat149
▴ 70
4
votes
3
replies
1.1k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 7.0 years ago by
James W. MacDonald
63k • written 7.0 years ago by
jhj89
▴ 10
13
votes
6
replies
5.9k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 8.2 years ago by
Gordon Smyth
48k • written 8.2 years ago by
carl.mann
▴ 20
15 results • Page
1 of 1
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Replies
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error
by
Gordon Smyth
48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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