Showing : goana • reset
1
vote
2
replies
132
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
7 weeks ago Barista • 0
4
votes
7
replies
385
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 18 months ago by 43k • written 18 months ago by ▴ 50
0
votes
3
replies
422
views
UnProducible error with goana and kegga function
limma goana kegga
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 50
6
votes
10
replies
2.0k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana edger
updated 2.2 years ago by 43k • written 2.2 years ago by ▴ 10
3
votes
4
replies
595
views
Cannot retrieve DE genes from goana GO terms
limma goana edger
updated 3.3 years ago by ★ 27k • written 3.3 years ago by ▴ 340
0
votes
3
replies
1.2k
views
Using kegga and goana for Plants
edger goana kegga
updated 3.7 years ago by 43k • written 3.7 years ago by • 0
0
votes
4
replies
1.9k
views
No annotated genes found in universe error using goana and kegga
limma goana gene set enrichment
3.9 years ago emy_66 • 0
0
votes
2
replies
3.0k
views
No genes found in universe : goana error
edger goana gene ontology
4.0 years ago fawazfebin ▴ 30
0
votes
2
replies
712
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 4.3 years ago by 43k • written 4.4 years ago by ★ 2.0k
3
votes
6
replies
1.3k
views
Strange output from goana()
edger goana
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
4
replies
1.1k
views
need help with microarray GO enrichment using goana
goana limma
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 60
4
votes
3
replies
746
views
including information indicating upregulation/downregulation of genes in goana()
edger goana
updated 5.1 years ago by 58k • written 5.1 years ago by ▴ 10
13
votes
6
replies
4.6k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma goana
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 20
13 results • Page 1 of 1
Recent ...
Replies
Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_f by Vince Schulz ▴ 60
This works for me. ``` packageurl <- "https://cran.r-project.org/src/contrib/Archive/rvcheck/rvcheck_0.1.8.tar.gz" install.packages(packa…
Comment: Interpretation of Log 2 fold change by adeler001 • 0
Thank you much James
Answer: Getting Bioconductor genome wide annotation for Candida auris by James W. MacDonald 58k
There isn't an `OrgDb` for C. auris on the `AnnotationHub`, so you will need to generate one yourself, using `makeOrgPackageFromNCBI` in th…
Comment: Getting Bioconductor genome wide annotation for Candida auris by Javan Okendo • 0
@James I am using clusterProfiler: https://learn.gencore.bio.nyu.edu/rna-seq-analysis/gene-set-enrichment-analysis/ for the enrichment anal…
Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_f by Chan • 0
Hi, I'm having a same problem with the 4.0.3 version of R. How did you download the older version 0.1.3 of rvcheck? I tried multiple ways.
Votes
Comment: Getting Bioconductor genome wide annotation for Candida auris
Answer: Getting Bioconductor genome wide annotation for Candida auris
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
Awards • All
Prophet to Vince Schulz ▴ 60
Scholar to davide risso ▴ 870
Popular Question to enricoferrero ▴ 570
Popular Question to Keith Hughitt ▴ 150
Popular Question to James W. MacDonald 58k
Locations • All
Australia, 7 minutes ago
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 56 minutes ago
France, 57 minutes ago
Bolzano, 1 hour ago
Australia, 1 hour ago
Traffic: 373 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6