Biostar Limma-trend

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limma limma-trend limma-voom

4 months ago hainct • 0

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1.3k

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limma limma-trend voom RNASeq

16 months ago • updated 15 months ago Tyler Sagendorf ▴ 10

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1.2k

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MNNCorrect scMerge limma-trend

updated 23 months ago by Gordon Smyth 47k • written 23 months ago by hainct • 0

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933

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limma-trend limma

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Jenny G • 0

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6.1k

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limma voom limma-trend

updated 5.1 years ago by max.moldovan • 0 • written 6.2 years ago by b.nota ▴ 360

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521

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search tximport limma-trend

updated 5.1 years ago by James W. MacDonald 62k • written 5.1 years ago by Jenny Drnevich ★ 2.0k

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tximport limma limma-trend edgeR

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Jenny Drnevich ★ 2.0k

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limma-trend duplicatecorrelation arrayweights limma

updated 5.5 years ago by Gordon Smyth 47k • written 5.5 years ago by maltethodberg ▴ 160

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4.6k

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limma limma voom limma-trend

updated 6.3 years ago by Gordon Smyth 47k • written 6.3 years ago by Nik Tuzov ▴ 80

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2.6k

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limma voom limma-trend

updated 6.4 years ago by Gordon Smyth 47k • written 6.4 years ago by maltethodberg ▴ 160

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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k

Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…

Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k

Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…

Comment: Full list of differential genes not obtained in topTable by Ankita • 0

thank you I tried it and it worked.

Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k

When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …

Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth Meaning, something like the the below? filterByExpr (y)

Votes

A: Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp