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Affymetrix file with probe set id
probe affy PROcess probe affy PROcess
updated 9.1 years ago by • 0 • written 19.6 years ago by ▴ 600
0
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1
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1.5k
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Creating Affymetrix CDF files
Annotation cdf probe Annotation cdf probe
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ▴ 600
0
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1
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1.2k
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ArrayExpress package error
ArrayExpress ArrayExpress
updated 15.4 years ago by ▴ 280 • written 15.4 years ago by ▴ 600
0
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1
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834
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layout cDNA in limma
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 600
0
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4
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1.6k
views
GEOQuery - MAS5 normalized data
GEOquery GEOquery
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 600
0
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1
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1.6k
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Comment: C: GEOQuery - MAS5 normalized data
15.5 years ago Srinivas Iyyer ▴ 600
0
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0
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774
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sigPathway on Agilent data
sigPathway sigPathway
15.9 years ago Srinivas Iyyer ▴ 600
0
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3
replies
1.4k
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making gene sets for geneSetTest of Limma
limma convert limma convert
updated 15.9 years ago by 50k • written 15.9 years ago by ▴ 600
0
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0
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1.4k
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Comment: C: making gene sets for geneSetTest of Limma
15.9 years ago Srinivas Iyyer ▴ 600
0
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1
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1.0k
views
obtaining genes responsible for over-representation of GO term - GOstats
GOstats GOstats
updated 16.0 years ago by 65k • written 16.0 years ago by ▴ 600
0
votes
1
reply
924
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 600
0
votes
1
reply
621
views
Agilent dual channel treated as single channel
limma limma
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 600
0
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1
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1.3k
views
calculating median expression between to identical gene names in data frame
Clustering Cancer affy Clustering Cancer affy
updated 16.1 years ago by ★ 1.8k • written 16.1 years ago by ▴ 600
0
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1
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2.7k
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Comment: C: How to get ENTREZID from Gene symbol in bioconductor
16.1 years ago Srinivas Iyyer ▴ 600
0
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3
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2.7k
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How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2 hgu133plus2
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 600
0
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4
replies
2.2k
views
heatmap.2 coloring question
updated 16.1 years ago by 65k • written 16.1 years ago by ▴ 600
0
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1
reply
2.2k
views
Comment: C: heatmap.2 coloring question
16.1 years ago Srinivas Iyyer ▴ 600
0
votes
3
replies
878
views
How can I make genesets for sigpathway
sigPathway sigPathway
updated 16.1 years ago by 65k • written 16.2 years ago by ▴ 600
0
votes
1
reply
878
views
Comment: C: How can I make genesets for sigpathway
16.1 years ago Srinivas Iyyer ▴ 600
1
vote
1
reply
1.3k
views
Is it possible to use RMA on Agilent Data
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 600
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0
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681
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Clustering question
Clustering Clustering
16.2 years ago Srinivas Iyyer ▴ 600
0
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1
reply
1.4k
views
Comment: C: Edge attributes in Rgraphviz
16.2 years ago Srinivas Iyyer ▴ 600
0
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3
replies
1.4k
views
Edge attributes in Rgraphviz
updated 16.2 years ago by ★ 5.5k • written 16.2 years ago by ▴ 600
0
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0
replies
649
views
Converting rgug4130a.db to a NetAffx format
Annotation GO rgug4130a Annotation GO rgug4130a
16.2 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
1.6k
views
Visualizing GOstats HyperGTest results
GO Visualization GOstats GO Visualization GOstats
updated 16.3 years ago by 65k • written 16.3 years ago by ▴ 600
0
votes
1
reply
563
views
Questions in GOvis.pdf - a GOStats vignette
GOstats GOstats
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 600
0
votes
1
reply
939
views
GOStats - HyperGTest - expert opinion needed about the approach selecting gene list
updated 16.3 years ago by 65k • written 16.3 years ago by ▴ 600
0
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4
replies
1.3k
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GOstats package - Graphical representation of enriched terms - Help needed
GO GO
updated 16.3 years ago by 21k • written 16.3 years ago by ▴ 600
0
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0
replies
1.3k
views
Comment: C: GOstats package - Graphical representation of enriched terms - Help needed
16.3 years ago Srinivas Iyyer ▴ 600
0
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0
replies
1.3k
views
Comment: C: GOstats package - Graphical representation of enriched terms - Help needed
16.3 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
2.0k
views
Limma - Gene set test
limma limma
updated 16.4 years ago by ▴ 190 • written 16.4 years ago by ▴ 600
0
votes
1
reply
782
views
Fishers Exact test, hyperGTest - GO analysis ... contd..
updated 16.4 years ago by 65k • written 16.4 years ago by ▴ 600
0
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0
replies
1.1k
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Fishers Exact test, hyperGTest - GO analysis
16.4 years ago Srinivas Iyyer ▴ 600
0
votes
0
replies
597
views
Array CGH from A-Z
CGH CGH
16.4 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
666
views
Variable probe binding and its impact on analysis
Microarray probe Microarray probe
updated 16.4 years ago by 21k • written 16.4 years ago by ▴ 600
0
votes
1
reply
1.0k
views
GO analysis for time-series data
GO GO
updated 16.5 years ago by ▴ 130 • written 16.5 years ago by ▴ 600
0
votes
1
reply
597
views
gene expression data help
Cancer Cancer
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 600
0
votes
2
replies
2.3k
views
KEGG pathways gene list
hgu133a hgu133a
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 600
0
votes
2
replies
1.2k
views
How to create expression data packages
GO GO
updated 17.8 years ago by ★ 5.5k • written 17.8 years ago by ▴ 600
2
votes
1
reply
5.8k
views
a question on creating model.matrix using limma
limma limma
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 600
0
votes
1
reply
816
views
Trouble calculating fold-changes - please help
Cancer Cancer
updated 17.9 years ago by 21k • written 18.0 years ago by ▴ 600
0
votes
1
reply
1.2k
views
CodeLink Package: Not a Codelink exported file.
codelink ArrayExpress codelink ArrayExpress
updated 18.0 years ago by ▴ 760 • written 18.0 years ago by ▴ 600
0
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0
replies
894
views
Comment: C: Limma: combining 2 microarray studies
18.0 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
894
views
Comment: C: Limma: combining 2 microarray studies
18.0 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
542
views
Comment: C: limma control spot weights and normalization
18.2 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
542
views
Answer: A: limma control spot weights and normalization
18.2 years ago Srinivas Iyyer ▴ 600
0
votes
0
replies
1.0k
views
Answer: A: problem reading GenePix files with .XLS extension
18.6 years ago Srinivas Iyyer ▴ 600
0
votes
0
replies
931
views
Comment: C: problem with package version of rat2302 1.8.5
18.6 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
835
views
Lymphoma data package
convert convert
updated 18.6 years ago by ★ 1.8k • written 18.6 years ago by ▴ 600
0
votes
1
reply
707
views
cDNA data to expression values
Normalization Normalization
updated 19.1 years ago by ★ 1.8k • written 19.1 years ago by ▴ 600
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