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Affymetrix file with probe set id
probe affy PROcess probe affy PROcess
updated 10.8 years ago by • 0 • written 21.2 years ago by ▴ 600
0
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1
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1.7k
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Creating Affymetrix CDF files
Annotation cdf probe Annotation cdf probe
updated 16.9 years ago by ★ 6.5k • written 16.9 years ago by ▴ 600
0
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1
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1.5k
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ArrayExpress package error
ArrayExpress ArrayExpress
updated 17.0 years ago by ▴ 280 • written 17.1 years ago by ▴ 600
0
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1
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1.1k
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layout cDNA in limma
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 600
0
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4
replies
2.1k
views
GEOQuery - MAS5 normalized data
GEOquery GEOquery
updated 17.1 years ago by ★ 1.3k • written 17.1 years ago by ▴ 600
0
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1
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2.1k
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Comment: C: GEOQuery - MAS5 normalized data
17.1 years ago Srinivas Iyyer ▴ 600
0
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0
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996
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sigPathway on Agilent data
sigPathway sigPathway
17.5 years ago Srinivas Iyyer ▴ 600
0
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3
replies
1.8k
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making gene sets for geneSetTest of Limma
limma convert limma convert
updated 17.5 years ago by 53k • written 17.5 years ago by ▴ 600
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0
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1.8k
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Comment: C: making gene sets for geneSetTest of Limma
17.5 years ago Srinivas Iyyer ▴ 600
0
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1
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1.2k
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obtaining genes responsible for over-representation of GO term - GOstats
GOstats GOstats
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 600
0
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1
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1.2k
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Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 600
0
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1
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780
views
Agilent dual channel treated as single channel
limma limma
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 600
0
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1
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1.6k
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calculating median expression between to identical gene names in data frame
Clustering Cancer affy Clustering Cancer affy
updated 17.7 years ago by ★ 1.8k • written 17.7 years ago by ▴ 600
0
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1
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3.0k
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Comment: C: How to get ENTREZID from Gene symbol in bioconductor
17.7 years ago Srinivas Iyyer ▴ 600
0
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3
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3.0k
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How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2 hgu133plus2
updated 17.7 years ago by ★ 7.2k • written 17.7 years ago by ▴ 600
0
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4
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2.5k
views
heatmap.2 coloring question
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 600
0
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1
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2.5k
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Comment: C: heatmap.2 coloring question
17.8 years ago Srinivas Iyyer ▴ 600
0
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3
replies
1.2k
views
How can I make genesets for sigpathway
sigPathway sigPathway
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 600
0
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1
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1.2k
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Comment: C: How can I make genesets for sigpathway
17.8 years ago Srinivas Iyyer ▴ 600
1
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1
reply
1.5k
views
Is it possible to use RMA on Agilent Data
updated 17.8 years ago by ★ 1.3k • written 17.8 years ago by ▴ 600
0
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0
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884
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Clustering question
Clustering Clustering
17.8 years ago Srinivas Iyyer ▴ 600
0
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1
reply
1.8k
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Comment: C: Edge attributes in Rgraphviz
17.9 years ago Srinivas Iyyer ▴ 600
0
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3
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1.8k
views
Edge attributes in Rgraphviz
updated 17.9 years ago by ★ 5.5k • written 17.9 years ago by ▴ 600
0
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0
replies
866
views
Converting rgug4130a.db to a NetAffx format
Annotation GO rgug4130a Annotation GO rgug4130a
17.9 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
2.0k
views
Visualizing GOstats HyperGTest results
GO Visualization GOstats GO Visualization GOstats
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 600
0
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1
reply
765
views
Questions in GOvis.pdf - a GOStats vignette
GOstats GOstats
updated 17.9 years ago by 25k • written 17.9 years ago by ▴ 600
0
votes
1
reply
1.2k
views
GOStats - HyperGTest - expert opinion needed about the approach selecting gene list
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 600
0
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4
replies
1.7k
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GOstats package - Graphical representation of enriched terms - Help needed
GO GO
updated 17.9 years ago by 21k • written 17.9 years ago by ▴ 600
0
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0
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1.7k
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Comment: C: GOstats package - Graphical representation of enriched terms - Help needed
17.9 years ago Srinivas Iyyer ▴ 600
0
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0
replies
1.7k
views
Comment: C: GOstats package - Graphical representation of enriched terms - Help needed
17.9 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
2.4k
views
Limma - Gene set test
limma limma
updated 18.0 years ago by ▴ 190 • written 18.0 years ago by ▴ 600
0
votes
1
reply
968
views
Fishers Exact test, hyperGTest - GO analysis ... contd..
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 600
0
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0
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1.4k
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Fishers Exact test, hyperGTest - GO analysis
18.0 years ago Srinivas Iyyer ▴ 600
0
votes
0
replies
784
views
Array CGH from A-Z
CGH CGH
18.0 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
883
views
Variable probe binding and its impact on analysis
Microarray probe Microarray probe
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 600
0
votes
1
reply
1.3k
views
GO analysis for time-series data
GO GO
updated 18.1 years ago by ▴ 130 • written 18.1 years ago by ▴ 600
0
votes
1
reply
779
views
gene expression data help
Cancer Cancer
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 600
0
votes
2
replies
2.6k
views
KEGG pathways gene list
hgu133a hgu133a
updated 18.7 years ago by ★ 1.2k • written 18.7 years ago by ▴ 600
0
votes
2
replies
1.5k
views
How to create expression data packages
GO GO
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 600
2
votes
1
reply
6.1k
views
a question on creating model.matrix using limma
limma limma
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 600
0
votes
1
reply
1.0k
views
Trouble calculating fold-changes - please help
Cancer Cancer
updated 19.6 years ago by 21k • written 19.6 years ago by ▴ 600
0
votes
1
reply
1.5k
views
CodeLink Package: Not a Codelink exported file.
codelink ArrayExpress codelink ArrayExpress
updated 19.7 years ago by ▴ 760 • written 19.7 years ago by ▴ 600
0
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0
replies
1.3k
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Comment: C: Limma: combining 2 microarray studies
19.7 years ago Srinivas Iyyer ▴ 600
0
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1
reply
1.3k
views
Comment: C: Limma: combining 2 microarray studies
19.7 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
865
views
Comment: C: limma control spot weights and normalization
19.9 years ago Srinivas Iyyer ▴ 600
0
votes
1
reply
865
views
Answer: A: limma control spot weights and normalization
19.9 years ago Srinivas Iyyer ▴ 600
0
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0
replies
1.3k
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Answer: A: problem reading GenePix files with .XLS extension
20.2 years ago Srinivas Iyyer ▴ 600
0
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0
replies
1.2k
views
Comment: C: problem with package version of rat2302 1.8.5
20.2 years ago Srinivas Iyyer ▴ 600
0
votes
2
replies
1.1k
views
Lymphoma data package
convert convert
updated 20.2 years ago by ★ 1.8k • written 20.2 years ago by ▴ 600
0
votes
1
reply
923
views
cDNA data to expression values
Normalization Normalization
updated 20.7 years ago by ★ 1.8k • written 20.7 years ago by ▴ 600
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