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Comment: Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
11 months ago alserg ▴ 280
1
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0
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1.8k
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Comment: Comment: NAs in fgseaMultilevel
16 months ago alserg ▴ 280
0
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1
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2.5k
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Comment: Comment: Ranking the GSEA Results
18 months ago alserg ▴ 280
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2
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2.5k
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Comment: Comment: Ranking the GSEA Results
18 months ago alserg ▴ 280
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0
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2.9k
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Comment: Comment: FGSEA pre-ranked input in increasing order or decreasing
18 months ago alserg ▴ 280
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0
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2.9k
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Comment: Comment: FGSEA pre-ranked input in increasing order or decreasing
18 months ago alserg ▴ 280
2
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1
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2.1k
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Answer: Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
20 months ago alserg ▴ 280
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1
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2.9k
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Comment: Comment: FGSEA pre-ranked input in increasing order or decreasing
20 months ago alserg ▴ 280
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2
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2.9k
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Answer: Answer: FGSEA pre-ranked input in increasing order or decreasing
20 months ago alserg ▴ 280
0
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1
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1.3k
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Comment: Comment: fgsea fork
21 months ago alserg ▴ 280
1
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0
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4.9k
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Comment: Comment: Implementation of the "original" GSEA algorithm in R
3.0 years ago alserg ▴ 280
3
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1
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4.9k
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Answer: Answer: Implementation of the "original" GSEA algorithm in R
3.0 years ago alserg ▴ 280
0
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0
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3.8k
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Comment: Comment: Problem with fgsea
3.7 years ago alserg ▴ 280
1
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0
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2.7k
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Comment: Comment: Compute fgsea with my own database with R version 4.0.2
4.6 years ago alserg ▴ 280
1
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1
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2.7k
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Answer: Answer: Compute fgsea with my own database with R version 4.0.2
4.6 years ago alserg ▴ 280
2
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0
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6.6k
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Answer: Answer: Warning with the example of GSEA
4.7 years ago alserg ▴ 280
0
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0
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1.8k
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Answer: A: do expression of leading edges within a negative NES term reflect the same direc
5.5 years ago alserg ▴ 280
1
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1
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2.4k
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Answer: A: what does gseaparam argument in fgsea() means?
5.5 years ago alserg ▴ 280
0
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0
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4.3k
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Comment: C: GSEA for RNA-seq analysis
7.2 years ago alserg ▴ 280
0
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1
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4.3k
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Comment: C: GSEA for RNA-seq analysis
7.4 years ago alserg ▴ 280
0
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1
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4.6k
views
Comment: C: fgsea p-values are mostly the same upon analysis
7.4 years ago alserg ▴ 280
0
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1
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2.5k
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Answer: A: Issues in generating workable rank file for GSEA
7.5 years ago alserg ▴ 280
1
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1
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2.5k
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Comment: C: ReactomePA / Reactome: GSEA error message
7.5 years ago alserg ▴ 280
0
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1
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3.8k
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Comment: C: Does fgsea order the stats argument?
7.8 years ago alserg ▴ 280
0
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0
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2.1k
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Comment: C: BiocParallel: zombie processes on FORK cluster
8.0 years ago alserg ▴ 280
0
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0
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2.1k
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Comment: C: BiocParallel: zombie processes on FORK cluster
8.0 years ago alserg ▴ 280
3
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3
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2.1k
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BiocParallel: zombie processes on FORK cluster
biocparallel parallel
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 280
2
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0
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6.2k
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Answer: A: GSEA using clusterprofileR
8.2 years ago alserg ▴ 280
0
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1
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3.8k
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Comment: C: Does fgsea order the stats argument?
8.3 years ago alserg ▴ 280
0
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1
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2.9k
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Comment: C: FGSEA only runs with <1000 permutations
8.4 years ago alserg ▴ 280
0
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0
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2.9k
views
Comment: C: FGSEA only runs with <1000 permutations
8.4 years ago alserg ▴ 280
1
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1
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2.9k
views
Answer: A: FGSEA only runs with <1000 permutations
8.4 years ago alserg ▴ 280
0
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0
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1.5k
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Answer: A: Retrieve the reactome ID of a protein
8.4 years ago alserg ▴ 280
0
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1
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3.8k
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Comment: C: Does fgsea order the stats argument?
8.5 years ago alserg ▴ 280
0
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0
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3.8k
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Answer: A: Does fgsea order the stats argument?
8.5 years ago alserg ▴ 280
1
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1
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4.4k
views
Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
0
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1
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4.4k
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Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
1
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0
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4.4k
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Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
0
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2
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4.4k
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Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
0
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1
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4.4k
views
Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
0
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1
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4.4k
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Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
1
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1
reply
4.4k
views
Comment: C: Change in pathway IDs scheme in reactome.db
8.7 years ago alserg ▴ 280
6
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15
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4.4k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 8.7 years ago by ▴ 150 • written 8.7 years ago by ▴ 280
0
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1
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3.1k
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Comment: C: Statistic for GSA
8.9 years ago alserg ▴ 280
2
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0
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2.3k
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Answer: A: Direction aware fgsea test
8.9 years ago alserg ▴ 280
0
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0
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2.9k
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Comment: C: Chipseeker is unavabile on Linux CentOS7 ?
9.1 years ago alserg ▴ 280
0
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1
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2.9k
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Comment: C: Chipseeker is unavabile on Linux CentOS7 ?
9.2 years ago alserg ▴ 280
4
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0
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14k
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Answer: A: pre-ranked GSEA within R?
9.4 years ago alserg ▴ 280
0
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0
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14k
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Comment: C: pre-ranked GSEA within R?
9.4 years ago alserg ▴ 280
0
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0
replies
14k
views
Comment: C: pre-ranked GSEA within R?
9.7 years ago alserg ▴ 280
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