0
votes
6
replies
2.5k
views
error when loading mzR
xcms mzR xcms mzR
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ★ 13k
0
votes
0
replies
982
views
HTqPCR normalization issue ?
Normalization HTqPCR Normalization HTqPCR
12.5 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
0
replies
1.4k
views
Error converting SBML to graph Object using R SBML
Network graph convert rsbml Network graph convert rsbml
12.5 years ago Michael Lawrence ★ 11k
0
votes
2
replies
1.6k
views
RIPSeeker multicore option not working fully?
Annotation GO RIPSeeker Annotation GO RIPSeeker
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 350
0
votes
3
replies
2.4k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Limma removeBatchEffect
limma limma
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 200
0
votes
0
replies
1.8k
views
ClusterProfiler Help
12.5 years ago kuntal worah ▴ 30
0
votes
0
replies
883
views
rtracklayer carrying over query results
rtracklayer rtracklayer
12.5 years ago Janet Young ▴ 740
0
votes
5
replies
1.7k
views
rtracklayer error?
Cancer rtracklayer Cancer rtracklayer
12.5 years ago Janet Young ▴ 740
0
votes
2
replies
2.1k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 12.5 years ago by ▴ 240 • written 12.5 years ago by ★ 1.1k
0
votes
1
reply
778
views
Error in extracting genes from Goterms using GOStats package
Annotation GO GOstats Annotation GO GOstats
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
1
reply
931
views
issue on removing all NAs (UNANNOTATED) rows
probe limma probe limma
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
4
replies
1.5k
views
Error converting SBML to graph Object using R SBML
graph convert graph convert
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 20
0
votes
1
reply
2.1k
views
How to subtract the background from foreground values in GenePix files
Normalization limma marray Normalization limma marray
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
0
replies
836
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation probe Annotation probe
12.5 years ago Levi Waldron ★ 1.1k
0
votes
0
replies
1.1k
views
read.exon( )
annmap annmap
12.5 years ago Guest User ★ 13k
1
vote
5
replies
3.0k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 12.5 years ago by ★ 1.6k • written 12.5 years ago by ▴ 680
0
votes
0
replies
869
views
How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation probe Annotation probe
12.5 years ago Feng Tian ▴ 110
0
votes
4
replies
1.7k
views
Diffbind : use of controlBam
DiffBind DiffBind
12.5 years ago Rory Stark ★ 5.2k
0
votes
0
replies
932
views
miRNA prediction against a gene list
miRNA miRNA
12.5 years ago Martin Leonardo ▴ 20
0
votes
2
replies
1.2k
views
RNAseq data normalization without differential expression
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 180
0
votes
0
replies
912
views
maskBAD package - Errors during creation of mask
Microarray probe maskBAD Microarray probe maskBAD
12.5 years ago Ron Rotkopf ▴ 10
0
votes
4
replies
2.3k
views
DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.5 years ago by ★ 1.9k • written 12.5 years ago by ▴ 40
0
votes
3
replies
1.6k
views
Rsubread for paired end SOLID sequencing
Sequencing Rsubread Sequencing Rsubread
updated 12.5 years ago by ★ 3.6k • written 12.5 years ago by ▴ 50
0
votes
1
reply
1.1k
views
problem with installation package useR2013
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Fwd: Conservative results using DEXSeq
Cancer Ovarian DEXSeq DESeq2 Cancer Ovarian DEXSeq DESeq2
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by 16k
0
votes
0
replies
2.6k
views
Pathview with non-KEGG organisms?
Pathways Organism pathview Pathways Organism pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
4
replies
3.5k
views
org.Hs.eg.db package loading issues
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 13k
0
votes
5
replies
2.4k
views
bumphunter::matchGenes and all=TRUE
Annotation bumphunter Annotation bumphunter
updated 12.5 years ago by ★ 6.5k • written 12.5 years ago by ▴ 30
0
votes
19
replies
3.0k
views
Quickest way to convert IDs in a data frame?
updated 12.5 years ago by ★ 1.7k • written 12.5 years ago by ▴ 680
2
votes
1
reply
1.4k
views
TopGO 0 nontrivial nodes
topGO topGO
12.5 years ago Dario Strbenac ★ 1.6k
0
votes
3
replies
2.2k
views
oligo package attaching phenodata for HuGene2.0 ST array
oligo oligo
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Remove samples and probes from Illumina 450K data
minfi minfi
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
2
replies
2.0k
views
Error in locateVariants
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ▴ 10
0
votes
8
replies
2.9k
views
GSE states
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Limma Design for Paired Samples Question
limma limma
12.5 years ago Fazelzadeh, Parastoo ▴ 10
0
votes
0
replies
3.5k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation Pathways Visualization graph PROcess gage pathview Annotation Pathways graph
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.6k
views
Pathview published in Bioinformatics
Visualization graph pathview Visualization graph pathview
12.5 years ago km ▴ 100
0
votes
1
reply
890
views
Conservative results using DEXSeq
DEXSeq DEXSeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ★ 13k
0
votes
1
reply
8.8k
views
Using DESeq normalized gene count to replace FPKM?
Visualization DESeq Visualization DESeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 10
0
votes
14
replies
4.7k
views
Trimming of partial adaptor sequences
Sequencing Cancer Biostrings Sequencing Cancer Biostrings
12.5 years ago Taylor, Sean D ▴ 250
0
votes
0
replies
1.2k
views
Suggestion - gene set enrichment of genes against BP and Disease gene sets
Microarray PROcess Microarray PROcess
12.5 years ago Bade ▴ 310
0
votes
1
reply
1.8k
views
DiffBind & Chip-exo
HapMap HapMap
12.5 years ago Rory Stark ★ 5.2k
0
votes
2
replies
3.2k
views
Problem using getGEO
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 10
0
votes
2
replies
953
views
Problem with decideTests - No p-val correction
GO GO
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 310
0
votes
0
replies
831
views
Paired RankProducts analysis
12.5 years ago Jon Manning ▴ 90
0
votes
1
reply
2.2k
views
Access source code of internal function within R
Rsamtools Rsamtools
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 360
0
votes
1
reply
1.1k
views
How to transform a fastq object in granges?
updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ▴ 40
0
votes
0
replies
1.7k
views
Job reminder: Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
12.5 years ago _Bio - Informatics ▴ 20
46,711 results • Page 532 of 935
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Popular Question to lianov • 0
Locations • All
The city by the bay, 42 minutes ago
WEHI, Melbourne, Australia, 4 hours ago
United States, 5 hours ago
United States, 6 hours ago
Barcelona, Spain, 6 hours ago
Traffic: 1158 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6