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1
reply
832
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unpackVcf not found
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 70
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updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 120
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Course reminder: Intermediate R / Bioc for Sequence Analysis
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
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Variability Plot For Toray Microarray Data
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12.9 years ago Pie.Mueller@unibas.ch ▴ 40
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affy code archeology: expresso behavior for liwong/invariantset
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updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
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BiomaRt: getLDS keeps returning NULL
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updated 12.9 years ago by ▴ 540 • written 12.9 years ago by ▴ 110
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biomaRt query: retrieve exon locations etc
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updated 12.9 years ago by ▴ 540 • written 12.9 years ago by ★ 1.1k
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getAnnMap: package hgu95av2 not available
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updated 12.9 years ago by 25k • written 12.9 years ago by ★ 13k
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1
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867
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Best Package To Normalize Microarray Data with Few Samples
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BitSeq: Required input for 3' bias correction on transcripts.
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rhdf5 and factors
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updated 12.9 years ago by ▴ 550 • written 12.9 years ago by ▴ 10
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640
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Normalization
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updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 13k
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12.9 years ago Guest User ★ 13k
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bioc data set not found
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updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ★ 1.2k
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edgeR: estimateGLMTrendDisp or estimateGLMCommonDisp
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updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 420
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split(SE, seqnames(SE)) doesn't work anymore
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12.9 years ago Tim Triche ★ 4.2k
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5
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getGEO error
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updated 12.9 years ago by 21k • written 12.9 years ago by ▴ 440
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12.9 years ago Guest User ★ 13k
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Removal of duplicate probes
probe probe
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 180
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Error message (probably) from AffyBatch.R when using a modified CDF
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updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 50
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question about "evidence code" in data.frame from GOstats packages with unsupported model organisms (Marc Carlson)
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updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ▴ 100
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12.9 years ago Lavinia Gordon ▴ 480
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shortread error?
updated 12.9 years ago by 25k • written 12.9 years ago by ★ 2.0k
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848
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differential expression analysis for 1 vs 1 experiment
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updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 180
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Advanced RNA-Seq and ChiP-Seq Data Analysis Course, 3-6 June 2013
12.9 years ago Gabriella Rustici ▴ 60
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12.9 years ago Silvia von der Heyde ▴ 20
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annotations
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
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R error by installing the org.Hs.eg.db package
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
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edgeR version
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updated 12.9 years ago by ▴ 420 • written 12.9 years ago by ★ 13k
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12.9 years ago Christopher T Gregg ▴ 210
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How to pool subgroups for makeContrasts() and subsequent limma analysis?
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 30
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reading data in AgiMicroRna package
updated 12.9 years ago by 21k • written 12.9 years ago by ★ 13k
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R 2.15.2 trouble
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updated 12.9 years ago by 25k • written 12.9 years ago by ★ 13k
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problem RangedData
12.9 years ago Michael Lawrence ★ 11k
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1
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Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
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updated 12.9 years ago by ▴ 210 • written 12.9 years ago by ★ 13k
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ExpressionSet Time-series correlation stuff
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updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 90
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[devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtools?
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updated 12.9 years ago by ▴ 10 • written 12.9 years ago by 25k
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using easyRNASeq to calculate RPKM values
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updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ▴ 260
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about ComBat plot for non parametric
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affy annotation database
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updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 20
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Class for a DataFrame of Matrices
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ▴ 250
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Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
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updated 12.9 years ago by ★ 1.6k • written 12.9 years ago by ★ 13k
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Transformation of Grange object to density per bin
12.9 years ago Hermann Norpois ▴ 110
0
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ASN.1
13.0 years ago • updated 12.9 years ago Ben Tupper ▴ 60
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Open computational biologist position at Genentech
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12.9 years ago Michael Lawrence ★ 11k
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Finding a amino acid regular expression pattern in a beta sheet?
12.9 years ago Fenton Christopher Graham ▴ 90
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