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[R] Problems in running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
13.5 years ago James W. MacDonald 65k
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1.6k
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CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA biomaRt miRNA biomaRt
13.5 years ago James W. MacDonald 65k
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858
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Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
13.6 years ago James W. MacDonald 65k
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0
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704
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[R] error with ReadAffy()
13.8 years ago James W. MacDonald 65k
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0
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707
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mogene10stv1 annotation problem
Annotation GO cdf probe Annotation GO cdf probe
14.0 years ago James W. MacDonald 65k
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2
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1.2k
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pulling functional information for SNPs
SNP affy biomaRt rtracklayer SNP affy biomaRt rtracklayer
updated 14.0 years ago by ★ 7.4k • written 14.0 years ago by 65k
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1.1k
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R: visualization of Loess smoothing curve
GO Visualization affy GO Visualization affy
14.0 years ago James W. MacDonald 65k
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624
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Using RMA normalization on 3 microarray replicates - valid?
Normalization Normalization
14.1 years ago James W. MacDonald 65k
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1
reply
746
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affyBatch: probes from intensity table not listed in the output of indexProbes()
Alignment affy Alignment affy
updated 14.3 years ago by ▴ 30 • written 14.3 years ago by 65k
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613
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regarding GCRMA normalization
cdf probe cdf probe
14.3 years ago James W. MacDonald 65k
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645
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Regardin GCRMA normalization
cdf probe cdf probe
14.3 years ago James W. MacDonald 65k
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1.1k
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[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
14.4 years ago James W. MacDonald 65k
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637
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End of the line of GOstats: making sense of the hypergeometric test results now
GO PROcess GOstats GO PROcess GOstats
14.5 years ago James W. MacDonald 65k
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1.1k
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Annotation.db: how automatically call a mapping?
Annotation GO moe430a affy limma annaffy affycoretools Annotation GO moe430a affy limma
14.9 years ago James W. MacDonald 65k
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2
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638
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[Bioc-devel] help with limma design
limma limma
14.9 years ago James W. MacDonald 65k
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696
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MAS5 to selected average
hgu133a affy hgu133a affy
15.0 years ago James W. MacDonald 65k
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1.3k
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mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
15.0 years ago James W. MacDonald 65k
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1.1k
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[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
15.2 years ago James W. MacDonald 65k
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1
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1.2k
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Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Annotation biomaRt Annotation biomaRt
updated 15.2 years ago by ▴ 60 • written 15.2 years ago by 65k
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814
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diferent pvalues for a treatment when other contrasts areremoved from targets file
updated 15.3 years ago by ▴ 50 • written 15.3 years ago by 65k
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1
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1.3k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.5 years ago by ▴ 140 • written 15.5 years ago by 65k
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1.1k
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problem installing affycoretools in R in linux environment
GO biomaRt affycoretools GO biomaRt affycoretools
15.6 years ago James W. MacDonald 65k
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2
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1.0k
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probe file for custom array
Microarray Cancer cdf probe gcrma matchprobes Microarray Cancer cdf probe gcrma
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by 65k
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0
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757
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PCA methods for probe level data
probe affy convert probe affy convert
16.5 years ago James W. MacDonald 65k
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1
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749
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limma design
Microarray GO affy limma PROcess Microarray GO affy limma PROcess
updated 16.9 years ago by ▴ 470 • written 16.9 years ago by 65k
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1
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574
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GOstats hyperGTest( ): Counts of EntrezIDs returned from summary() are not same as the numbers of EntrezIDs extracted from probeSetSummary()
Microarray GO Cancer Microarray GO Cancer
17.1 years ago James W. MacDonald 65k
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3
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1.2k
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Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 17.1 years ago by ▴ 870 • written 17.1 years ago by 65k
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5
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1.3k
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homology package question
Microarray Cancer Microarray Cancer
updated 17.1 years ago by ★ 2.9k • written 17.1 years ago by 65k
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483
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ANN:xy2i and i2xy to be deprecated
Microarray Cancer cdf affy Microarray Cancer cdf affy
17.2 years ago James W. MacDonald 65k
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568
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Response - difference between hgu95aprobe and hgu95acdf
Microarray Cancer probe Microarray Cancer probe
17.4 years ago James W. MacDonald 65k
0
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2
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446
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How to get the number of Stat pairs used in MAS5
Microarray Normalization Cancer probe Microarray Normalization Cancer probe
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by 65k
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0
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346
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fetch filen names
Microarray Microarray
17.5 years ago James W. MacDonald 65k
0
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0
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1.1k
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question_gene list from venn diagram limma function for two color array data
Microarray Annotation Cancer GOstats affycoretools Microarray Annotation Cancer GOstats
17.6 years ago James W. MacDonald 65k
0
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1
reply
235
views
Question about "kidpack" installation
Microarray Cancer Microarray Cancer
updated 17.6 years ago by 25k • written 17.6 years ago by 65k
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2
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840
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about plot rglist
Microarray Cancer limma cycle Microarray Cancer limma cycle
updated 17.7 years ago by ★ 2.2k • written 17.7 years ago by 65k
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2
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1.7k
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summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
17.7 years ago James W. MacDonald 65k
0
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0
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1.1k
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how to retrieve data in list using getBM in biomaRt package?
Microarray GO Cancer probe Biobase annotate limma biomaRt Microarray GO Cancer probe
17.8 years ago James W. MacDonald 65k
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0
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224
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limma: results from different coefficients
Microarray Microarray
18.0 years ago James W. MacDonald 65k
0
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0
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747
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justGCRMA error in BioC 1.8
Microarray cdf affy gcrma matchprobes Microarray cdf affy gcrma matchprobes
18.0 years ago James W. MacDonald 65k
0
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0
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495
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Bugfix in gcrma
Microarray Cancer gcrma Microarray Cancer gcrma
18.0 years ago James W. MacDonald 65k
0
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0
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543
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[R] Problem using GOstats package in R 2.2.1
Microarray GO Cancer GOstats Microarray GO Cancer GOstats
18.2 years ago James W. MacDonald 65k
0
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1
reply
2.5k
views
F-statistic in limma
Microarray limma Microarray limma
updated 18.2 years ago by ▴ 110 • written 18.2 years ago by 65k
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1
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977
views
limma question
Microarray probe limma codelink Microarray probe limma codelink
updated 18.2 years ago by ▴ 30 • written 18.2 years ago by 65k
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1
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608
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justRMA/GCRMA and alternative cdfs
Microarray Cancer cdf probe affy Microarray Cancer cdf probe affy
18.3 years ago James W. MacDonald 65k
0
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5
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1.2k
views
Re-mapped Affy CDF files
Microarray Cancer cdf probe affy Microarray Cancer cdf probe affy
18.4 years ago • updated 18.3 years ago James W. MacDonald 65k
0
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0
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774
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chromLocation
Microarray probe ideogram Microarray probe ideogram
18.4 years ago James W. MacDonald 65k
0
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1
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249
views
November BioC Devel Changelog
Microarray Cancer Microarray Cancer
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by 65k
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0
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590
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Database for Microarray Data - request for user stories
Microarray Annotation GUI Cancer probe Microarray Annotation GUI Cancer probe
18.5 years ago James W. MacDonald 65k
0
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0
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729
views
getGene in biomaRt package
Microarray Cancer cdf biomaRt Microarray Cancer cdf biomaRt
18.5 years ago James W. MacDonald 65k
0
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0
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532
views
Redirected to BioC Re: [Bioc-devel] aafTableAnn() in annaffy_1.0.18 ?
Microarray Cancer Biobase Microarray Cancer Biobase
18.6 years ago James W. MacDonald 65k
159 results • Page 2 of 4
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