Great Question

Created A Question With More Than 5,000 Views

Awarded 246 times (see all awards). Earned by the following contributors:
john ▴ 120
8 years, 10 months ago
Germany
[DESEQ2] How to access the normalized data of a DESeqDataSet
john ▴ 120
8 years, 10 months ago
Germany
[DESEQ2] How to access the normalized data of a DESeqDataSet
Cataphractus • 0
8 years, 11 months ago
Bioconductor 3.0 and old versions with R 3.2.0
lelemraposo • 0
8 years, 11 months ago
Brazil
Problems to install a package - Ubuntu
AurelieMLB ▴ 50
8 years, 11 months ago
United Kingdom
Design formula and Design matrix in DESeq
ycding ▴ 10
8 years, 11 months ago
United States
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
candida.vaz ▴ 50
8 years, 11 months ago
Singapore
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
candida.vaz ▴ 50
8 years, 11 months ago
Singapore
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
Patrick Schorderet ▴ 20
9 years ago
United States
package ‘edgeR’ is not available (for R version 3.1.2)
Eric P ▴ 10
9 years ago
Sweden
cannot find -llapack + -lblas for package install
KJ Lim ▴ 420
9 years ago
Finland
edgeR: Value of variation of biological variation (BCV)
mali salmon ▴ 370
9 years ago
Israel
Nanostring analysis with limma
daniil.sarkisyan ▴ 10
9 years ago
Sweden
Problems updating Bioconductor with R 3.2.0
stephen66 ▴ 50
9 years, 1 month ago
United States
how to get genomic coordinates for a list of genes
rodriguez.varenka • 0
9 years, 1 month ago
United States
DESeq Error in round(assay(se)) : non-numeric argument to mathematical function
yg • 0
9 years, 1 month ago
United States
DESEQ2 results and contrast (and a relevel question)
c.lieftink@nki.nl ▴ 40
9 years, 1 month ago
Netherlands
With DESeq2 "Not full rank" Error with design ~ line + time + condition
François Lefebvre ▴ 50
9 years, 1 month ago
Canada
Ballgown vs (voom,edgeR,DESeq,limma)
francesca.defilippis ▴ 100
9 years, 2 months ago
European Union
DESeq2 output explanation
Chao-Jen Wong ▴ 580
9 years, 2 months ago
USA/Seattle/Fred Hutchinson Cancer Rese…
Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
zshao1 • 0
9 years, 4 months ago
United States
Can't update DESeq2 to most updated version
zeynep özkeserli ▴ 160
9 years, 4 months ago
Turkey
Limma Design for Paired Samples Question
jport ▴ 10
9 years, 5 months ago
United States
Inputting counts of zero into DESeq2
salahm ▴ 70
9 years, 5 months ago
DESeq2 - Acquiring batch-corrected values for PCA and hierarchical clustering
alejandro.colaneri ▴ 20
9 years, 5 months ago
United States
Removing genes with very low counts in all samples before run DESeq
skyoflcz ▴ 20
9 years, 6 months ago
China
Confused in the usage of formula in DESeq or DESeq2
lucashusquin ▴ 10
9 years, 6 months ago
France
problem loading lumi package, Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
rafi A ▴ 20
9 years, 6 months ago
United States
Probe to gene id conversion
Dave Tang ▴ 210
9 years, 7 months ago
Australia/Perth/UWA
Unable to find an inherited method for function ‘exprs’
dnajuice ▴ 20
9 years, 7 months ago
errors when installing cummeRbund package
Guest User ★ 13k
9 years, 8 months ago
merging GRange objects
Guest User ★ 13k
9 years, 8 months ago
no method for coercing S4 class to a vector
Guest User ★ 13k
9 years, 8 months ago
DESeq - plotPCA
Guest User ★ 13k
9 years, 8 months ago
heatmap.2() get matrix after hierarchical clustering
Guest User ★ 13k
9 years, 8 months ago
XML package cannot be installed
Guest User ★ 13k
9 years, 8 months ago
no method for coercing S4 class to a vector
Guest User ★ 13k
9 years, 8 months ago
Error message with DESeqDataSet
Guest User ★ 13k
9 years, 8 months ago
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Guest User ★ 13k
9 years, 8 months ago
reading fasta file into R
Guest User ★ 13k
9 years, 8 months ago
DESeq2(analysis without replicate)
Guest User ★ 13k
9 years, 8 months ago
DESeq - plotPCA
Guest User ★ 13k
9 years, 8 months ago
DESeq - plotPCA
Guest User ★ 13k
9 years, 8 months ago
heatmap.2() get matrix after hierarchical clustering
Subinoy Biswas ▴ 10
9 years, 8 months ago
genefilter installation error
Fabrice Tourre ▴ 970
9 years, 9 months ago
deseq2: convert ensembl ID to gene symbol.
rob yang ▴ 50
9 years, 9 months ago
DESeq2 basemean and log2foldchange
Brian Haas ▴ 90
9 years, 9 months ago
RNA-Seq, generate batch-free count matrix
shirley zhang ★ 1.0k
9 years, 9 months ago
how to calculate gene length to be used in rpkm() in edgeR
Thomas Hampton ▴ 750
9 years, 10 months ago
heatmap.2 Z scores
wang peter ★ 2.0k
9 years, 11 months ago
how to set R memory limit
246 results • Page 4 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6