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4 years, 5 months ago
United States
Confused about using ComBat_seq with voom and limma? Should run batch as a covariate and use uncorrected instead?
4 years, 5 months ago
Austria
Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
4 years, 5 months ago
Australia
GRanges::distanceToNearest does not return distance to nearest
4 years, 5 months ago
Spain
Using both spike in and TMM normalizations in ChIP-seq samples
4 years, 5 months ago
Palo Alto, CA, USA
extracting the KEGG pathway for a set of genes
4 years, 5 months ago
Germany, Göttingen
DESeq2::DESeq(..., parallel = TRUE) fails if a partition has only genes with 0 counts across all samples
4 years, 5 months ago
United States
pdInfoBuilder created problematic package for Affymetrix chip tiling array
4 years, 5 months ago
Italy
derfinder model.matrix with limma or single base-level F-statistics analysis
4 years, 6 months ago
United States
What are these genes ? [How to get Ensembl IDs for them]
4 years, 6 months ago
Australia
Selecting pairs of exons from differentially spliced genes
4 years, 6 months ago
United States
Senior Bioinformatician - University of Alabama at Birmingham
4 years, 6 months ago
Germany/Heidelberg/German Cancer Resear…
Time series DE gene analysis with edgeR where specific timepoints have NA levels across different patients
4 years, 6 months ago
India
Using R BioMart getting orthologus genes between two species
4 years, 6 months ago
Germany
DEXseq: How to do differential exon usage of genes with overlapping exons
4 years, 6 months ago
United Kingdom
Repeated measures RNAseq analysis (edgeR or limma-voom)
4 years, 6 months ago
Germany
tximeta throws error when combining Salmon outputs from multiple datasets
4 years, 6 months ago
United States
DiffBind dba.report(): Question about DBA_ALL_METHODS
4 years, 6 months ago
Italy
Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --- failure: length > 1 in coercion to logical --- --- srcref ---
4 years, 7 months ago
United States
Bioconductor 2021 Scholarship and Caregiver Awards
4 years, 7 months ago
France
Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis
4 years, 7 months ago
WEHI, Melbourne, Australia
Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
4 years, 7 months ago
United States
Strange error in bsseq when trying to assign seqinfo
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