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Created An Answer That Has Been Accepted
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following contributors:
4 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Differential expression error in edgeR - maybe from design matrix?
4 years, 4 months ago
United States
Answer: How to run getSeq() on a GRanges object with invalid DNA letters?
4 years, 5 months ago
United States
Answer: Concatenating expression counts from different RNA-seq quantification tools
4 years, 5 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Interpreting ellipses in PCAtools for bulk RNAseq
4 years, 5 months ago
United States
Answer: Salmon and DEseq2 - analysis of libraries saturated with ncRNAs
4 years, 5 months ago
United States
Answer: Hypergeometric (gene set enrichment) test using "Categories" package
4 years, 5 months ago
Max Planck Institute for molecular Gene…
Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
4 years, 5 months ago
Max Planck Institute for molecular Gene…
Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
4 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Optimal edgeR design for a single-factor experiment
4 years, 5 months ago
Cambridge, UK
Answer: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM
4 years, 5 months ago
United States
Answer: MultiAssayExperiment sampleMap Requirement for All Assays
4 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: Mapping nothing when doing Enrichment Analysis of the TAIR using enrichGO in R
4 years, 5 months ago
The city by the bay
Answer: barcodeRanks unusual warning "In smooth.spline(x[new.keep], y[new.keep], df = df
4 years, 5 months ago
WEHI, Melbourne, Australia
Answer: The eBayes function gives two p-values for each row
4 years, 5 months ago
United States
Answer: Why does limma want log2 intensities but DESeq2 use raw counts?
4 years, 5 months ago
United Kingdom
Answer: How to save results of each step from ChAMP pipeline?
4 years, 5 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: How do I adjust for other factors in Limma differential expression analysis?
4 years, 5 months ago
United States
Answer: LOC gene IDs for characterised genes in annotation files
4 years, 5 months ago
Cambridge, UK
Answer: Retrieve loadings/eigenvalues for PCAs using DiffBind's dba.plotPCA
4 years, 5 months ago
The city by the bay
Answer: Effect of feature number on adjusted p-values
4 years, 5 months ago
United States
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
4 years, 5 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: How to make OrgPackage (BSgenome data) package available for R Bioconductor user
4 years, 5 months ago
Seattle, WA, United States
Answer: Extracting the findPalindrome() results
4 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: retrieve gene IDs from GO.db GO
4 years, 5 months ago
Barcelona, Spain
Answer: Is there a different way to generate a tree for phyloseq object
4 years, 5 months ago
United States
Answer: How to retain metadata after running RemoveBatchEffect() after RUVSeq to format
4 years, 5 months ago
United States
Answer: How to overcome issue linked to loading big R object
4 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
4 years, 5 months ago
The city by the bay
Answer: Should we apply DropletUtils on control case separately or on a common sce objec
4 years, 5 months ago
Novartis Institutes for BioMedical Rese…
Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
4 years, 5 months ago
United States
Answer: Can I use BSgenome for in-house assemblies?
4 years, 6 months ago
United States
Answer: PATHVIEW incorrect values being plotted in output
4 years, 6 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Ensemble site connection error
4 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Pipeline for an Anova-like analysis in edgeR
4 years, 6 months ago
Seattle, WA, United States
Answer: unable to forge custom BSgenome after update
4 years, 6 months ago
WEHI, Melbourne, Australia
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
4 years, 6 months ago
The city by the bay
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
4 years, 6 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Complex Heatmap shows just one color
4 years, 6 months ago
United States
Answer: Error: package or namespace load failed for ‘org.Mm.eg.db':
4 years, 6 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Warning in EnhancedVolcano plot
4 years, 6 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Enhanced Volcano Plot Controlling Color Layers
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