Scholar
Created An Answer That Has Been Accepted
Awarded 5092 times (see all awards). Earned by the
following contributors:
4 years, 6 months ago
United States
Answer: Using DESeq2 to identify changing transcriptional activity in a metagenome
4 years, 6 months ago
WEHI, Melbourne, Australia
Answer: edgeR for a mixture experiment
4 years, 6 months ago
Belgium
Answer: NChannelSet --> eSet/expressionSet ? How to transform?
4 years, 6 months ago
Belgium
Answer: How to save multiple assays and subsequent processed data in single SummarizedEx
4 years, 6 months ago
Barcelona/Universitat Pompeu Fabra
Answer: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
4 years, 6 months ago
Cambridge, UK
Answer: A mismatch between DiffBind's results and the same results retreieved as DESeq2
4 years, 7 months ago
United States
Answer: How to reassign DESeqDataSet design to include newly added column to columnData
4 years, 7 months ago
United States
Answer: Error in (function (classes, fdef, mtable) : unable to find an inherited met
4 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Multi-level comparisons with paired data: duplicateCorrelation or not?
4 years, 7 months ago
Seattle, WA, United States
Answer: Does there exists a getSeq like function for ranges that wrap around end to star
4 years, 7 months ago
Cambridge, UK
Answer: Error with dba.count(dbObj) in DiffBind
4 years, 7 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: PCAtools lables missing or out of the plot
4 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Get the latest gene name from Entrez ID
4 years, 7 months ago
United States
Answer: Error when using org.Hs.eg.db package
4 years, 7 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: GSEA generate genesets
4 years, 7 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: DESEQ object filter
4 years, 7 months ago
United States
Answer: how to make a contrast of uniquely DE genes
4 years, 7 months ago
United States
Answer: duplicate exonrank information in library("Homo.sapiens")
4 years, 7 months ago
United States
Answer: TxImport when quant.sf files have different index files
4 years, 7 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: DeSeq2 design for sgRNA fold-change
4 years, 7 months ago
United States
Answer: DEGpatterns and functional analysis of clusters
4 years, 7 months ago
Bergen
Answer: Error when using ORFik: findORFsFasta gives wrong start and stop codon
4 years, 7 months ago
United States
Answer: DESeq2: relevel() unsuccessfully setting control group
4 years, 7 months ago
United States
Answer: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
4 years, 7 months ago
Spain
Answer: iupac2meme function missing in universalmotif package
4 years, 7 months ago
United States
Answer: Negative svalues from DESeq2 lfcShrink with ashr
4 years, 7 months ago
United States
Answer: Problem with pd.hta.2.0 package installation
4 years, 7 months ago
Novartis Institutes for BioMedical Rese…
Answer: How to better run DEXSeq with a very large number of samples?
4 years, 7 months ago
Germany
Answer: Error installing diffuStats: compilation failed
4 years, 7 months ago
United States
Answer: Splitting multiple groups - three different ages
4 years, 7 months ago
United States
Answer: Using group instead of interaction term on a custom edited matrix
4 years, 7 months ago
United States
Answer: Produce quantile normalized expression values for use with BatchQC
4 years, 7 months ago
Austria
C: Help understanding the contrast function in DESeq2
4 years, 7 months ago
Cambridge, UK
Answer: DiffBind analysis for ATAC-Seq error Error processing one or more read files
4 years, 7 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: DEseq2 results
4 years, 8 months ago
United States
Answer: makeTxDbFromUCSC("mm10", "refGene") gives "not supported" error
4 years, 8 months ago
United States
Answer: How to find the source code of the package STRINGdb ?
4 years, 8 months ago
WEHI, Melbourne, Australia
Answer: How to download KEGG pathways for list of enriched genes
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