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Created An Answer That Has Been Accepted
Awarded 5099 times (see all awards). Earned by the
following contributors:
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Repeated Measures-Cross Over Study for RNAseq data using variancePartition::drea
2 years, 8 months ago
University of Zurich, Switzerland
Answer: add column with name in R
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Question about avereps function of limma
2 years, 8 months ago
United States
Answer: GOstats - subsetting termGraphs with terms from the html report and missing node
2 years, 9 months ago
United States
Answer: how to extract and match information of two filein R
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: do I have to do this step in creating DGEList ?
2 years, 9 months ago
United States
Answer: Potential problem with independent filtering in DESeq2
2 years, 9 months ago
Germany
Answer: Updating DESeq2 object's design with sva output
2 years, 9 months ago
United States
Answer: Joining different datasets and analyzing using the group-specific condition effe
2 years, 9 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Reproducibility using limma for DE Analysis
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
2 years, 10 months ago
EMBL Heidelberg
Answer: I cannot install annotables package in Rstudio (macOS)
2 years, 10 months ago
BRFAA Athens, Greece
Answer: How can I draw a barplot of complexheatmap according 'Tumor Type'
2 years, 10 months ago
France
Answer: ComplexHeatmap - Default distance and hierarchical clustering methods
2 years, 10 months ago
Germany
Answer: [DESeq2] There is no difference in expression in my heatmap
2 years, 10 months ago
United States
Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Processing data with voom "expression values" and "weights"
2 years, 10 months ago
United States
Answer: Flank GenomicRanges on Both Sides
2 years, 10 months ago
United States
Answer: Is it possible to annotate a GRanges Object that has scaffolding names and not c
2 years, 10 months ago
United States
Answer: Successor of genesBy Defunct Function
2 years, 10 months ago
Australia
Answer: Problem obtaining NCBI gene IDs from Ensembl version 107
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Estimating Fold-Changes of Lowly Expressed Genes
2 years, 10 months ago
United States
Answer: How to search a .narrowPeak file for a list of specific genes using GenomicRange
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Limma repeated-measures model: Partial NA coefficients
2 years, 11 months ago
United States
Answer: Normalizing Salmon output count data matrix using DESeq2
2 years, 11 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
2 years, 11 months ago
Cambridge, UK
Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: limma: R-squared for time-series data
2 years, 11 months ago
Germany / Heidelberg / DKFZ
Answer: ComplexHeatmap - z-score color coding failed
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: limma plotMDS - logFC inverted?
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Limma, Log2FC and pvalue changing depending on the order of the samples.
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