Scholar
Created An Answer That Has Been Accepted
Awarded 5089 times (see all awards). Earned by the
following contributors:
2 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
2 years, 2 months ago
Japan
Answer: CAGEr bug report: wrong consensus cluster results
2 years, 2 months ago
United States
Answer: Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
2 years, 2 months ago
Germany
Answer: Importing RSEM processed data already formatted as a summarized experiment into
2 years, 2 months ago
United States
Answer: IsoformSwitchAnalyzeR Error in reading GTF file
2 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Does this RNAseq experiment require a repeated measures approach?
2 years, 3 months ago
United States
Answer: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
2 years, 3 months ago
United States
Answer: P-value histogram of testLinearModel is not uniform
2 years, 3 months ago
EMBL Heidelberg
Answer: Use with_go along with other filters in getBM function
2 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Extracting fitted expression matrix from Limma
2 years, 3 months ago
Guangzhou
Answer: Change dotsize to be the same in multiple plots - enrichplot dotplot
2 years, 3 months ago
Miami, US
Answer: TCGAbiolinks cannot find bcr_patient_barcode
2 years, 3 months ago
Seattle, WA, United States
Answer: SummarizedExperiment is now warning on attach about `read_block` namespace confl
2 years, 4 months ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
2 years, 4 months ago
Cambridge, UK
Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) :
non-numeric
2 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Contrast of Contrasts in Limma
2 years, 4 months ago
Seattle, WA, United States
Answer: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct
2 years, 4 months ago
United States
Answer: DESeq2 1.40.0 binary install issue on Mac M1 (Bioconductor 3.17)
2 years, 4 months ago
United States
Answer: DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
2 years, 4 months ago
WEHI, Melbourne, Australia
Answer: edgeR with Successive Differences Contrast Coding?
2 years, 5 months ago
Cambridge, UK
Answer: how diffbind count the reads of each peak in each sample?
2 years, 5 months ago
Cambridge, UK
Answer: Positive and negative value fold value in ATAC seq using DiffBind
2 years, 5 months ago
United States
Answer: How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
2 years, 5 months ago
United States
Answer: Using gcrma() and using the t-test to compare single genes of interest for disea
2 years, 5 months ago
United States
Answer: Adding cell population estimates as a covariate in DESeq2 differential gene expr
2 years, 5 months ago
Germany
Answer: Normalisation of data using DESeq2 with multi-groups
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Question about transforming log expression values to antilog values in limma
2 years, 5 months ago
United States
Answer: Mistake in Cook's distance calculation in DESeq2 or am I missing something?
2 years, 5 months ago
Italy
Answer: Add 'ColSideColors' using 'heatmap.2' function
2 years, 5 months ago
United States
Answer: How to annotate genes from results of DiffBind
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: RNA-Seq normalization of pre and post treatment groups
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Question about filter by expression (filterByExpr) in edgeR
2 years, 5 months ago
Germany
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Repeated Measures-Cross Over Study for RNAseq data using variancePartition::drea
2 years, 6 months ago
University of Zurich, Switzerland
Answer: add column with name in R
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Question about avereps function of limma
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