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Created An Answer That Has Been Accepted
Awarded 5048 times (see all awards). Earned by the
following contributors:
2 years, 3 months ago
The city by the bay
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
2 years, 3 months ago
Germany
Answer: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
2 years, 3 months ago
Germany
Answer: Which is the best type of data for correlation or survival analysis
2 years, 3 months ago
Germany
Answer: How can I do pathway analysis by ChipPeakAnno package?
2 years, 3 months ago
Germany
Answer: SingleCellExperiment: Edit cluster IDs in colLabels
2 years, 3 months ago
Australia
Answer: edgeR processAmplicons not recognizing hairpin sequences
2 years, 4 months ago
United States
Answer: Contradictory results in smallRNA differential expression analysis using DESeq2
2 years, 4 months ago
United States
Answer: Convert an R data.frame to a bed file in R
2 years, 4 months ago
Australia/Melbourne/Olivia Newton-John …
Answer: cellCounts() function floating point error
2 years, 4 months ago
WEHI, Melbourne, Australia
Answer: GSVA perfomed on RSEM Expected Count data
2 years, 4 months ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
2 years, 4 months ago
WEHI, Melbourne, Australia
Answer: How to judge DEG analysis of these samples could be done by using limma::voom
2 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Removing the duplicated genes before limma::voom by using limma::avereps
2 years, 4 months ago
United States
Answer: Doing normalization when using voom for DEG analysis?
2 years, 4 months ago
United States
Answer: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2 years, 4 months ago
EMBL Heidelberg
Answer: Unable to convert Uniprot ID to Gene IDs using Biomart
2 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
2 years, 4 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Why Negative value from GSVA
2 years, 5 months ago
United States
Answer: ComplexHeatmap: Change font size of annotation axis values
2 years, 5 months ago
Australia/Melbourne/Olivia Newton-John …
Answer: cellCounts() function floating point error
2 years, 5 months ago
United States
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
2 years, 5 months ago
United States
Answer: package 'BiocInstaller' is not available (for R version 3.4.4)
2 years, 5 months ago
United States
Answer: Using Age or other numerical variable to model expression in deseq2
2 years, 5 months ago
United States
Answer: Help with limma contrast, difference of a difference?
2 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: Pathview unable to download pathways
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: How many features an ExpressionSet can contain ?
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Stuck on how to voom-limma on RSEM data from TCGA
2 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Error in RNAseq123 analysis, unexpected symbol.
2 years, 5 months ago
United States
Answer: How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
2 years, 5 months ago
United States
Answer: How to add gene symbol in GeneRegionTrack in Gviz
2 years, 5 months ago
United States
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: removeBatchEffect: Coefficients not estimable when using "batch matrix" for `cov
2 years, 6 months ago
United States
Answer: how to color specific node or gene symbol from cnetplot ?
2 years, 6 months ago
United States
Answer: DESeq2 how to specify contrast to test difference of differences
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Help with constructing design matrix for edgeR/limma
2 years, 6 months ago
United States
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: LogFC values in edgeR - w/wo intercept
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Question on RNA-Seq single sample data analysis in EdgeR
2 years, 6 months ago
Barcelona/Universitat Pompeu Fabra
Answer: How to run GSVA with partially NA genes
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