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Created An Answer That Has Been Accepted
Awarded 5082 times (see all awards). Earned by the
following contributors:
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Rsubread featureCounts outputs dozens of temp files, no counts
2 years, 8 months ago
United States
Answer: error loading kallisto output in tximport
2 years, 8 months ago
Barcelona/Universitat Pompeu Fabra
Answer: 'combined score' calculation with singscore vs gsva
2 years, 8 months ago
United States
Answer: system.file() failed to load .gmt file.
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: How to visaulize RNAseq data with edgeR, limma, ...?
2 years, 8 months ago
University of Oxford
Answer: Errors when plotting data using heatmap_GO (GOexpress)
2 years, 8 months ago
Germany
Answer: What is the correct way to import transcript abundances from 3' Quantseq results
2 years, 8 months ago
United States
Answer: Error in dimnamesGets(x, value) when trying to read data using Seurat package
2 years, 9 months ago
Germany
Answer: Removing metadata rows containing NA values in GRanges
2 years, 9 months ago
Seattle, WA, United States
Answer: Biostrings multiple pattern match
2 years, 9 months ago
United States
Answer: getSeq failing with DNAStringSet and GRanges
2 years, 9 months ago
Wageningen University, Wageningen, the …
Answer: Limma adj.p.value the same for many different p.values
2 years, 9 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Question on performing filtering by gene expression on a normalized matrix in li
2 years, 10 months ago
United States
Answer: Error message from protein coding prediction with VariantAnnotation
2 years, 10 months ago
The city by the bay
Answer: Efficiently working with HDF5-backed SingleCellExperiments
2 years, 10 months ago
Cambridge, UK
Answer: DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: limma::goana - "Invalid value for odds"
2 years, 10 months ago
MSKCC | New York, NY
Answer: How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable fo
2 years, 10 months ago
United States
Answer: biomaRt finding transcript lenghts
2 years, 10 months ago
United States
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
2 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
2 years, 10 months ago
United States
Answer: DESeq2 contrasts using all relevant samples vs all samples
2 years, 10 months ago
United States
Answer: Log2FC values slightly higher in some genes after DESeq2 shrinkage
2 years, 10 months ago
United States
Answer: [BigWigFile] import as RLE vs default and length comparaison
2 years, 11 months ago
United States
Answer: the difference between getGEO and getGEOSuppFiles
2 years, 11 months ago
European Union
Answer: Error in Create switchAnalyzeRlist
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: paired samples, comparing expression given a continuous variable
2 years, 11 months ago
The city by the bay
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
2 years, 11 months ago
Germany
Answer: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
2 years, 11 months ago
Germany
Answer: Which is the best type of data for correlation or survival analysis
2 years, 11 months ago
Germany
Answer: How can I do pathway analysis by ChipPeakAnno package?
2 years, 11 months ago
Germany
Answer: SingleCellExperiment: Edit cluster IDs in colLabels
2 years, 11 months ago
Australia
Answer: edgeR processAmplicons not recognizing hairpin sequences
2 years, 11 months ago
United States
Answer: Contradictory results in smallRNA differential expression analysis using DESeq2
2 years, 11 months ago
United States
Answer: Convert an R data.frame to a bed file in R
2 years, 11 months ago
Australia/Melbourne
Answer: cellCounts() function floating point error
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: GSVA perfomed on RSEM Expected Count data
2 years, 11 months ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: How to judge DEG analysis of these samples could be done by using limma::voom
2 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Removing the duplicated genes before limma::voom by using limma::avereps
2 years, 11 months ago
United States
Answer: Doing normalization when using voom for DEG analysis?
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