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Created An Answer That Has Been Accepted
Awarded 5092 times (see all awards). Earned by the
following contributors:
3 years, 2 months ago
WEHI, Melbourne, Australia
Answer: GSVA perfomed on RSEM Expected Count data
3 years, 2 months ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
3 years, 3 months ago
WEHI, Melbourne, Australia
Answer: How to judge DEG analysis of these samples could be done by using limma::voom
3 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Removing the duplicated genes before limma::voom by using limma::avereps
3 years, 3 months ago
United States
Answer: Doing normalization when using voom for DEG analysis?
3 years, 3 months ago
United States
Answer: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
3 years, 3 months ago
EMBL Heidelberg
Answer: Unable to convert Uniprot ID to Gene IDs using Biomart
3 years, 3 months ago
Barcelona/Universitat Pompeu Fabra
Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
3 years, 3 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Why Negative value from GSVA
3 years, 3 months ago
United States
Answer: ComplexHeatmap: Change font size of annotation axis values
3 years, 3 months ago
Australia/Melbourne
Answer: cellCounts() function floating point error
3 years, 3 months ago
United States
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
3 years, 3 months ago
United States
Answer: package 'BiocInstaller' is not available (for R version 3.4.4)
3 years, 3 months ago
United States
Answer: Using Age or other numerical variable to model expression in deseq2
3 years, 4 months ago
United States
Answer: Help with limma contrast, difference of a difference?
3 years, 4 months ago
Wageningen University, Wageningen, the …
Answer: Pathview unable to download pathways
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: How many features an ExpressionSet can contain ?
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Stuck on how to voom-limma on RSEM data from TCGA
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Error in RNAseq123 analysis, unexpected symbol.
3 years, 4 months ago
United States
Answer: How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
3 years, 4 months ago
United States
Answer: How to add gene symbol in GeneRegionTrack in Gviz
3 years, 4 months ago
United States
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: removeBatchEffect: Coefficients not estimable when using "batch matrix" for `cov
3 years, 4 months ago
United States
Answer: how to color specific node or gene symbol from cnetplot ?
3 years, 4 months ago
United States
Answer: DESeq2 how to specify contrast to test difference of differences
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Help with constructing design matrix for edgeR/limma
3 years, 4 months ago
United States
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: LogFC values in edgeR - w/wo intercept
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Question on RNA-Seq single sample data analysis in EdgeR
3 years, 5 months ago
Barcelona/Universitat Pompeu Fabra
Answer: How to run GSVA with partially NA genes
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: how to make a group to apply the data to CAMERA
3 years, 5 months ago
United States
Answer: Robust Multi-array Average could get negative value or not?
3 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: UniprotKB AC/ID to Entrez ID Conversion
3 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
3 years, 5 months ago
United States
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
3 years, 5 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
3 years, 5 months ago
United States
Answer: Quantile Normalization after rma or not?
3 years, 5 months ago
United States
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
3 years, 5 months ago
United States
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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