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7 years, 5 months ago
United States
A: How to export enrichGO results for future visualization with barplot, dotplot, e
7 years, 5 months ago
United States
Where to download expected counts instead of normalized RSEM for TCGA LUAD?
7 years, 5 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 5 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
7 years, 5 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
7 years, 5 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 5 months ago
United States
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
7 years, 5 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
7 years, 5 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
7 years, 5 months ago
United States
How does DESeq2 handle zero counts in one condition?
7 years, 5 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
7 years, 5 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 5 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 5 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
7 years, 5 months ago
United States
A: DESeq2 error: "vector: cannot make a vector of mode 'S4'"
7 years, 5 months ago
WEHI, Melbourne, Australia
A: ERROR: No residual degrees of freedom in linear model fits
7 years, 5 months ago
The city by the bay
A: Limma weights, non-specific interactions
7 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 5 months ago
United States
A: [DESeq2] Extracting results based on set thresholds
7 years, 5 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
7 years, 5 months ago
Australia/Melbourne
C: File not found error when using dupRadar::analyzeDuprates
7 years, 5 months ago
United States
A: lfcShrink behavior with homogeneous expression dataset
7 years, 5 months ago
7 years, 5 months ago
United States
A: WGCNA: Understanding module-trait correlations
7 years, 6 months ago
Australia
Rsubread install fails, "unable to load shared object Rsubread.so"
7 years, 6 months ago
The city by the bay
A: Problem with coefficients that are not estimable (limma)
7 years, 6 months ago
United States
A: bpaggregate with formula returns strange error message
7 years, 6 months ago
United States
A: DESeq2: possible to compare read counts at single nucleotide level ?
7 years, 6 months ago
Mitchell Cancer Institute, Mobile AL, U…
Microarray analysis of .idat files to identify degs
7 years, 6 months ago
EMBL Heidelberg
A: How can I get all installed Bioconductor packages?
7 years, 6 months ago
WEHI, Melbourne, Australia
A: Differential profile for only one normal - tumor pair
7 years, 6 months ago
Seattle, WA, United States
A: How does GenomicFeature calculate 3'UTR?
7 years, 6 months ago
United States
A: problem for Using RNA-seq data-set in WGCNA
7 years, 6 months ago
CUNY Graduate School of Public Health a…
A: Horizontal integration of multi omic data, with continuous dependent variable
7 years, 6 months ago
WEHI, Melbourne, Australia
A: Using limma to model gene expression changes with age
7 years, 6 months ago
United States
A: Querying specific TCGA datasets through the MultiAssayExperiment R package
7 years, 6 months ago
The city by the bay
A: EdgeR: Explaning dispersion types to newbies
7 years, 6 months ago
United States
A: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
7 years, 6 months ago
The city by the bay
A: edgeR: setting up proper contrasts for interactions
7 years, 6 months ago
CUNY Graduate School of Public Health a…
A: MultiAssayExperiment wideformat operations
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