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Created An Answer With At Least 3 Up-Votes
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following contributors:
8 years, 12 months ago
University of Oxford
Is it common to get all 0 values when running the randomForest step in GOexpress?
8 years, 12 months ago
WEHI, Melbourne, Australia
A: One replicate (one-color OR two-color) is enough to use Limma?
8 years, 12 months ago
The city by the bay
A: One replicate (one-color OR two-color) is enough to use Limma?
9 years ago
Icahn School of Medicine at Mount Sinai…
A: What's the relationship between "design" and "contrasts"?
9 years ago
United States
A: Annotating DEseq output using AnnotationDbi mapIds and most results say NA
9 years ago
United States
A: bumphunter output clarification: p values achieved with b=1000: further correcti
9 years, 1 month ago
WEHI, Melbourne, Australia
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
9 years, 1 month ago
EMBL Heidelberg
A: biomaRT GO-ID retreival showing different genes than AmiGO
9 years, 1 month ago
The city by the bay
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
9 years, 1 month ago
WEHI, Melbourne, Australia
A: how to deal with technical replicates in limma camera
9 years, 1 month ago
EMBL Heidelberg
A: xcms and xcmsSet no longer works on my Mac
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Test whether expression levels of two gene sets are significantly different
9 years, 2 months ago
The city by the bay
A: edgeR: Tagwise dispersion when using offset matrix
9 years, 2 months ago
United States
A: Mathematics behind LIMMA when we have quantitative outcome
9 years, 2 months ago
The city by the bay
A: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
A: edgeR RNA-seq analysis using glm
9 years, 2 months ago
New York, NY
A: ExperimentHub()[["EH359"]] has character expression values
9 years, 2 months ago
China/Guangzhou/Southern Medical Univer…
A: missing header file fftw3.h for EBImage
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
A: DE for genes with very low counts using limma.
9 years, 2 months ago
The city by the bay
A: duplicateCorrelation and Pearson Correlation
9 years, 3 months ago
Canada
A: meta analysis of microarrays of small sample sizes
9 years, 3 months ago
WEHI, Melbourne, Australia
A: limma; Only fit list of certain genes/ filter eSet
9 years, 3 months ago
The city by the bay
A: Limma, remove batch effects and technical replicates
9 years, 3 months ago
WEHI, Melbourne, Australia
A: How featureCounts define the gene length
9 years, 3 months ago
WEHI, Melbourne, Australia
A: modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
9 years, 3 months ago
United States
A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen
9 years, 3 months ago
WEHI, Melbourne, Australia
A: Explanation of an ANOVA approach of multiple coefficients in limma with topTable
9 years, 3 months ago
EMBL European Molecular Biology Laborat…
A: Processing imaging data from high throughput compound screen with EBImage
9 years, 3 months ago
Germany
A: Plotting several heatmaps onto the same grid with the ComplexHeatmap package in
9 years, 3 months ago
United States
A: How to deal with these data with DESeq2 ?? In hurry!
9 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
A: [Limma] Testing continuous variable with interaction
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