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Created An Answer With At Least 3 Up-Votes
Awarded 2263 times (see all awards). Earned by the
following contributors:
5 years, 11 months ago
The city by the bay
A: could not find function "plotQC" in scater package
5 years, 11 months ago
The city by the bay
A: Further clarification on when not to use duplicateCorrelation with technical rep
5 years, 11 months ago
United States
A: What is NCBI Gene ID, where to find it and how to convert to entrez ID?
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Bug in estimateDisp of "edgeR"? "weights' matched by multiple actual arguments
5 years, 11 months ago
United States
A: Does edgeR need to specify reference group?
5 years, 11 months ago
WEHI, Melbourne, Australia
A: RNASeq DE analysis starts from different DESeq2 normalized data, TMM normalized
5 years, 12 months ago
The city by the bay
A: Different number of marker genes between same clusters
6 years ago
United States
A: Variation between technical replicates (DESeq2, batch effects)
6 years ago
United States
A: Error: 'exprs<-' is not an exported object from 'namespace:affy'
6 years ago
United States
A: Design matrix with intercept for multiple blocks comparison
6 years ago
United States
A: seqlengths is not an exported object from namespace GenomicRanges
6 years, 1 month ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
6 years, 1 month ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
6 years, 1 month ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
6 years, 1 month ago
WEHI, Melbourne, Australia
A: the normalization methods of MRN and TMM methods supplied by DESeq2 and edgeR
6 years, 1 month ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
6 years, 1 month ago
United States
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
6 years, 1 month ago
United States
A: DESeq2 with multiple treatments but no replicates
6 years, 1 month ago
United States
A: the coordinates of exons of RefSeq or ENSEMBL genes
6 years, 1 month ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
6 years, 1 month ago
Germany / Heidelberg / DKFZ
ComplexHeatmap removes row labels if annotation is added
6 years, 1 month ago
Germany / Heidelberg / DKFZ
C: ComplexHeatmap removes row labels if annotation is added
6 years, 2 months ago
United States
A: What can I do if I only have TPM but not raw counts data?
6 years, 2 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
6 years, 2 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
6 years, 2 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
6 years, 2 months ago
The city by the bay
A: normalization of RNA-seq data after over-expressing the transcription factors
6 years, 2 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
6 years, 2 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
6 years, 2 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
6 years, 2 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
6 years, 2 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
6 years, 2 months ago
United States
A: EdgeR - Model matrix for complex model similar to user guide 3.5 example - but m
6 years, 2 months ago
The city by the bay
A: Complex multifactorial design with random effects in Limma/voom
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