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Created An Answer With At Least 3 Up-Votes
Awarded 2247 times (see all awards). Earned by the
following contributors:
5 years, 3 months ago
United States
A: Design matrix with intercept for multiple blocks comparison
5 years, 3 months ago
United States
A: seqlengths is not an exported object from namespace GenomicRanges
5 years, 3 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 3 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 3 months ago
Australia/Melbourne/Olivia Newton-John …
featureCounts for multiple features
5 years, 3 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 3 months ago
WEHI, Melbourne, Australia
A: the normalization methods of MRN and TMM methods supplied by DESeq2 and edgeR
5 years, 3 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 3 months ago
United States
A: RNA-seq normalization without filtering
5 years, 3 months ago
United States
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
5 years, 3 months ago
United States
A: DESeq2 with multiple treatments but no replicates
5 years, 4 months ago
United States
A: the coordinates of exons of RefSeq or ENSEMBL genes
5 years, 4 months ago
Australia/Melbourne/Olivia Newton-John …
featureCounts for multiple features
5 years, 4 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 4 months ago
Germany / Heidelberg / DKFZ
ComplexHeatmap removes row labels if annotation is added
5 years, 4 months ago
Germany / Heidelberg / DKFZ
C: ComplexHeatmap removes row labels if annotation is added
5 years, 4 months ago
United States
A: What can I do if I only have TPM but not raw counts data?
5 years, 4 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 4 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 4 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
5 years, 4 months ago
The city by the bay
A: normalization of RNA-seq data after over-expressing the transcription factors
5 years, 4 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
5 years, 4 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 4 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 4 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 4 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 4 months ago
United States
A: EdgeR - Model matrix for complex model similar to user guide 3.5 example - but m
5 years, 4 months ago
The city by the bay
A: Complex multifactorial design with random effects in Limma/voom
5 years, 5 months ago
The city by the bay
A: scRNA-seq : Classification of cell cycle phase
5 years, 5 months ago
EMBL Heidelberg
A: Cannot determine whether maintainer is subscribed to the bioc-devel mailing list
5 years, 5 months ago
WEHI, Melbourne, Australia
A: Removing batch effect with limma::removeBatchEffect() actually exacerbates the e
5 years, 5 months ago
The city by the bay
A: Re-numbering blocking IDs on paired samples with duplicateCorrelation or design
5 years, 5 months ago
WEHI, Melbourne, Australia
A: Any efficient workaround to identify highly variable genes in Affymetrix microar
5 years, 5 months ago
United States
A: Removing batch effect with limma::removeBatchEffect() actually exacerbates the e
5 years, 6 months ago
The city by the bay
A: logCPM to CPM conversion after removeBatchEffect()
5 years, 6 months ago
United States
A: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5 years, 6 months ago
United States
A: Adjusting for known covariates before coexpression analysis with WGCNA
5 years, 6 months ago
EMBL Heidelberg
A: 'biomaRt expected a character string of length 1' error with getBM and reseq mrn
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