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Created An Answer With At Least 3 Up-Votes
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following contributors:
4 years, 10 months ago
WEHI, Melbourne, Australia
A: Moderated F-test followed by moderated t-test in limma
4 years, 10 months ago
EMBL Heidelberg
A: Getting rs ids using chr coordinates | Biomart
4 years, 11 months ago
United States
A: Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
4 years, 12 months ago
United States
A: Odd DESeq2 results - high significance in genes with too many zeros
5 years ago
United States
A: Using spike-in RNA for normalization of Salmon counts imported using Tximport
5 years ago
United States
A: Correctly set contrast with DESeq2 for not full rank design matrix
5 years, 1 month ago
United States
A: Limma multi-group analysis - General F-test
5 years, 1 month ago
Italy
A: readMSData and netCDF files, how to set polarity ?
5 years, 1 month ago
WEHI, Melbourne, Australia
A: edgeR Time course analysis, choice on degree of freedom
5 years, 1 month ago
WEHI, Melbourne, Australia
A: Suggestion for next revision of edgeR User Guide re Design matrix setup
5 years, 1 month ago
The city by the bay
A: Suggestion for next revision of edgeR User Guide re Design matrix setup
5 years, 1 month ago
WEHI, Melbourne, Australia
A: linear mixed models using edgeR+limma
5 years, 1 month ago
United States
A: The Mac version of R always reports an error when installing WGCNA
5 years, 1 month ago
WEHI, Melbourne, Australia
A: Multi-level experiments in Limma
5 years, 2 months ago
Naas, Republic of Ireland
A: Converting numeric variables to factors in DESeq metadata
5 years, 2 months ago
United States
A: Cannot extract size factor from DESeq2 analysis
5 years, 2 months ago
The city by the bay
A: featAssayPlotDefaults does not work for SummarizedExperiment object
5 years, 2 months ago
United States
A: Can NanoString data be analyzed using DESeq2?
5 years, 2 months ago
Seattle, WA, United States
A: Biostrings matchPattern with lower case
5 years, 3 months ago
United States
A: RNA seq analysis using Deseq2 and apeglm lfc shrinkage
5 years, 3 months ago
Seattle, WA, United States
A: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
5 years, 3 months ago
WEHI, Melbourne, Australia
A: How to know if I should use voomWithQualityWeights() or not?
5 years, 4 months ago
WEHI, Melbourne, Australia
A: Correcting for tissue purity in differential expression analysis
5 years, 4 months ago
Naas, Republic of Ireland
A: [WGCNA]How to visualize network of genes in one module
5 years, 5 months ago
United States
A: Filtering low variance genes for WGCNA
5 years, 5 months ago
WEHI, Melbourne, Australia
A: How to deal with elimination of genes when using filterByExpr function?
5 years, 5 months ago
Australia/Melbourne/Monash University G…
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
5 years, 6 months ago
WEHI, Melbourne, Australia
A: Can I use (length bias normalization) from packages like EDAseq or cqn for input
5 years, 7 months ago
United States
A: WGCNA gene significance and module membership
5 years, 8 months ago
Sheffield, Uk
A: How to convert dataframe into ExpressionSetIllumina / summarized data with beada
5 years, 8 months ago
United States
A: Filtering lowly-expressed genes in a RNASeq dataset with continuous instead of g
5 years, 8 months ago
WEHI, Melbourne, Australia
A: Account for inter individual variability at the baseline using nested models
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