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following contributors:
4 years, 5 months ago
United States
A: Correctly set contrast with DESeq2 for not full rank design matrix
4 years, 5 months ago
United States
A: Limma multi-group analysis - General F-test
4 years, 5 months ago
Italy
A: readMSData and netCDF files, how to set polarity ?
4 years, 6 months ago
WEHI, Melbourne, Australia
A: edgeR Time course analysis, choice on degree of freedom
4 years, 6 months ago
WEHI, Melbourne, Australia
A: Suggestion for next revision of edgeR User Guide re Design matrix setup
4 years, 6 months ago
The city by the bay
A: Suggestion for next revision of edgeR User Guide re Design matrix setup
4 years, 6 months ago
WEHI, Melbourne, Australia
A: linear mixed models using edgeR+limma
4 years, 6 months ago
United States
A: The Mac version of R always reports an error when installing WGCNA
4 years, 6 months ago
WEHI, Melbourne, Australia
A: Multi-level experiments in Limma
4 years, 7 months ago
Republic of Ireland
A: Converting numeric variables to factors in DESeq metadata
4 years, 7 months ago
United States
A: Cannot extract size factor from DESeq2 analysis
4 years, 7 months ago
The city by the bay
A: featAssayPlotDefaults does not work for SummarizedExperiment object
4 years, 7 months ago
United States
A: Can NanoString data be analyzed using DESeq2?
4 years, 7 months ago
Seattle, WA, United States
A: Biostrings matchPattern with lower case
4 years, 8 months ago
United States
A: RNA seq analysis using Deseq2 and apeglm lfc shrinkage
4 years, 8 months ago
Seattle, WA, United States
A: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4 years, 8 months ago
WEHI, Melbourne, Australia
A: How to know if I should use voomWithQualityWeights() or not?
4 years, 9 months ago
WEHI, Melbourne, Australia
A: Correcting for tissue purity in differential expression analysis
4 years, 9 months ago
Republic of Ireland
A: [WGCNA]How to visualize network of genes in one module
4 years, 10 months ago
United States
A: Filtering low variance genes for WGCNA
4 years, 10 months ago
WEHI, Melbourne, Australia
A: How to deal with elimination of genes when using filterByExpr function?
4 years, 10 months ago
Australia/Melbourne/Monash University B…
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
4 years, 11 months ago
WEHI, Melbourne, Australia
A: Can I use (length bias normalization) from packages like EDAseq or cqn for input
5 years ago
Sheffield, Uk
A: How to convert dataframe into ExpressionSetIllumina / summarized data with beada
5 years ago
United States
A: Filtering lowly-expressed genes in a RNASeq dataset with continuous instead of g
5 years ago
WEHI, Melbourne, Australia
A: Account for inter individual variability at the baseline using nested models
5 years, 1 month ago
The city by the bay
A: could not find function "plotQC" in scater package
5 years, 1 month ago
The city by the bay
A: Further clarification on when not to use duplicateCorrelation with technical rep
5 years, 1 month ago
United States
A: What is NCBI Gene ID, where to find it and how to convert to entrez ID?
5 years, 1 month ago
WEHI, Melbourne, Australia
A: Bug in estimateDisp of "edgeR"? "weights' matched by multiple actual arguments
5 years, 1 month ago
United States
A: Does edgeR need to specify reference group?
5 years, 1 month ago
WEHI, Melbourne, Australia
A: RNASeq DE analysis starts from different DESeq2 normalized data, TMM normalized
5 years, 2 months ago
The city by the bay
A: Different number of marker genes between same clusters
5 years, 2 months ago
United States
A: Variation between technical replicates (DESeq2, batch effects)
5 years, 2 months ago
Australia
A: EdgeR - Complex design - contrasts/coefficients
5 years, 2 months ago
United States
A: Error: 'exprs<-' is not an exported object from 'namespace:affy'
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