Question about Illuminaio
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makoouji • 0
@makoouji-15288
Last seen 6.8 years ago

I'm trying to manipulate the data of HumanHT-12_v4 with illuminaio and there is one question in it.

Although the instruction of illuinaio says "CodesbBinData" means ProbeID in GenomeStudio, I think it is not true.

In the case of HumanHT-12_v4, CodesBinData has the same meaning of Array_Address_ID. Is it correct?

We can get an original manifest files here.

https://support.illumina.com/downloads.html

 

illuminaio illumina human ht-12 v4 gene expression micorarray • 1.2k views
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Mike Smith ★ 6.6k
@mike-smith
Last seen 45 minutes ago
EMBL Heidelberg

In the beadarray package we used to refer to the numeric identifier as the ProbeID, which IIRC is the Array_Address_ID in Illumina's nomenclature.  The IDs of the form ILMN_1234 were referred to as Illumina IDs in the beadarray documentation, but I guess the official manifest calls them Probe_ID.

Ultimately it doesn't really matter what the name is, as long as you're aware that the CodesBinData column holds some sort of identifier and you are confident you can map that back to a genomic locus correctly.

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Great! Thank you for your quick and informative comment.
I can go further with your answer.

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