Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

3.9 years ago Sarah • 0

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

4.1 years ago Jojo • 0

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1.7k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 8.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.2 years ago by Giovanni Calice ▴ 160

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2.3k

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limma illuminaio idat gzip

updated 8.8 years ago by Matthew Ritchie ▴ 1000 • written 8.8 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 8.9 years ago by Matthew Ritchie ▴ 1000 • written 10.6 years ago by Stephen Piccolo ▴ 600

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illuminaio limma

9.3 years ago • updated 5.4 years ago h.mon • 0

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minfi illuminaio epic

9.7 years ago m.van_iterson ▴ 20

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limma lumi illuminaio illimina 450k methylation microarray

10.0 years ago Adam • 0

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3.3k

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illuminaio idat beadarray

updated 10.5 years ago by Mike Smith ★ 6.6k • written 10.5 years ago by willj ▴ 30

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limma illuminaio illumina human WG6v2

updated 10.7 years ago by Matthew Ritchie ▴ 1000 • written 10.7 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

11.1 years ago • updated 11.0 years ago lacion • 0

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SNP illuminaio SNP illuminaio

updated 12.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 12.2 years ago by Mike Smith ★ 6.6k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

12.3 years ago Kasper Daniel Hansen ★ 6.5k

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beadarray lumi illuminaio idat

updated 4.3 years ago by Gordon Smyth 53k • written 12.3 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k

I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…

Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k

Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…

Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230

Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…

Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0

Thank you, I appreciate your time and help.

Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k

> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…

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DiffBind dropping peaks in ATAC-seq data

A: decideTests() options in LIMMA

A: Removing cell cycle genes in large data set integration

Answer: Quick two questions on limpa

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