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Comment: Use with_go along with other filters in getBM function
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RuBBiT0
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Thank you! I think that makes much sense to me.
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Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Comment: Interpret plot from DiffBind
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Chris
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Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?
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lfa and gcatest have been reinstated.
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How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…
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