Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

3.1 years ago Sarah • 0

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3.3 years ago Jojo • 0

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1.3k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 7.2 years ago by Mike Smith ★ 6.6k • written 7.2 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 7.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.4 years ago by Giovanni Calice ▴ 160

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2.0k

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limma illuminaio idat gzip

updated 8.0 years ago by Matthew Ritchie ▴ 1000 • written 8.0 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 8.0 years ago by Matthew Ritchie ▴ 1000 • written 9.8 years ago by Stephen Piccolo ▴ 600

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illuminaio limma

8.5 years ago • updated 4.6 years ago h.mon • 0

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minfi illuminaio epic

8.9 years ago m.van_iterson ▴ 20

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limma lumi illuminaio illimina 450k methylation microarray

9.1 years ago Adam • 0

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illuminaio idat beadarray

updated 9.7 years ago by Mike Smith ★ 6.6k • written 9.7 years ago by willj ▴ 30

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limma illuminaio illumina human WG6v2

updated 9.9 years ago by Matthew Ritchie ▴ 1000 • written 9.9 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

10.3 years ago • updated 10.2 years ago lacion • 0

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2.5k

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SNP illuminaio SNP illuminaio

updated 11.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 11.4 years ago by Mike Smith ★ 6.6k

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2.1k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.5 years ago Kasper Daniel Hansen ★ 6.5k

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beadarray lumi illuminaio idat

updated 3.4 years ago by Gordon Smyth 52k • written 11.5 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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