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illuminaio
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5
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5
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3.9k
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Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
3.9 years ago
Sarah
• 0
2
votes
4
replies
2.1k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
4.1 years ago
Jojo
• 0
0
votes
2
replies
1.7k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 8.0 years ago by
Mike Smith
★ 6.6k • written 8.0 years ago by
makoouji
• 0
0
votes
2
replies
1.8k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.1 years ago by
Giovanni Calice
▴ 160
0
votes
1
reply
2.3k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 8.8 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Guido Hooiveld
★ 4.1k
1
vote
5
replies
3.6k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 8.8 years ago by
Matthew Ritchie
▴ 1000 • written 10.6 years ago by
Stephen Piccolo
▴ 600
1
vote
2
replies
1.5k
views
read.idat and empty Symbols
illuminaio
limma
9.2 years ago • updated 5.4 years ago
h.mon
• 0
1
vote
2
replies
2.2k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
9.7 years ago
m.van_iterson
▴ 20
1
vote
2
replies
2.6k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
9.9 years ago
Adam
• 0
4
votes
10
replies
3.3k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 10.5 years ago by
Mike Smith
★ 6.6k • written 10.5 years ago by
willj
▴ 30
1
vote
4
replies
3.2k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 10.7 years ago by
Matthew Ritchie
▴ 1000 • written 10.7 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
0
votes
10
replies
3.1k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
11.0 years ago
lacion
• 0
0
votes
1
reply
2.6k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 12.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.2 years ago by
Mike Smith
★ 6.6k
0
votes
0
replies
2.3k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
12.3 years ago
Kasper Daniel Hansen
★ 6.5k
3
votes
9
replies
7.9k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 4.2 years ago by
Gordon Smyth
53k • written 12.3 years ago by
Sean Davis
21k
15 results • Page
1 of 1
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Replies
Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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