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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

5 weeks ago • updated 24 days ago Sarah • 0

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217

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3 months ago Jojo • 0

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545

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 4.2 years ago by Mike Smith ★ 5.5k • written 4.2 years ago by makoouji • 0

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710

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 4.4 years ago by Kasper Daniel Hansen 6.5k • written 4.4 years ago by Giovanni Calice ▴ 160

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1.3k

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limma illuminaio idat gzip

updated 5.0 years ago by Matthew Ritchie ▴ 1000 • written 5.0 years ago by Guido Hooiveld ★ 3.2k

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1.9k

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illuminaio normalization

updated 5.0 years ago by Matthew Ritchie ▴ 1000 • written 6.8 years ago by Stephen Piccolo ▴ 580

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600

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illuminaio limma

5.5 years ago • updated 19 months ago h.mon • 0

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985

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minfi illuminaio epic

5.9 years ago m.van_iterson ▴ 20

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1.5k

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limma lumi illuminaio illimina 450k methylation microarray

6.1 years ago Adam • 0

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1.3k

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illuminaio idat beadarray

updated 6.7 years ago by Mike Smith ★ 5.5k • written 6.7 years ago by willj ▴ 30

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1.8k

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limma illuminaio illumina human WG6v2

updated 6.9 years ago by Matthew Ritchie ▴ 1000 • written 6.9 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

7.2 years ago lacion • 0

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1.9k

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SNP illuminaio SNP illuminaio

updated 8.4 years ago by Kasper Daniel Hansen 6.5k • written 8.4 years ago by Mike Smith ★ 5.5k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

8.5 years ago Kasper Daniel Hansen 6.5k

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4.2k

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beadarray lumi illuminaio idat

updated 5 months ago by Gordon Smyth 45k • written 8.5 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Got that sir, thanks so much!

Comment: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…

Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0

Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

Answer: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …

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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

Awards • All

Scholar to Guido Hooiveld ★ 3.2k

Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10