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Shi, Tao
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@shi-tao-199
Last seen 9.6 years ago
Hi list,
Do you know what happened to CosmicMart in biomaRt? It's gone.
Thanks!
Tao
Hi list,
Do you know what happened to CosmicMart in biomaRt? It's gone.
Thanks!
Tao
Looks like they set up a required registration: https://groups.google.com/forum/#!topic/biomart-users/-46uAPn709c, which I don't think biomaRt is set up to deal with.
Hi Jim,
Thanks for the quick reply! I saw that post, but it was earlier last year and thought they might have some work-around already. Apperantly not. It would be nice to bring the cosmic functionality back to biomaRt, unless there are other ways to query it from R.
Best,
Tao
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Looking closer, I don't see that there is a cosmic mart service any longer, unless it was somewhere other than https://cancer.sanger.ac.uk/cancergenome/projects/cosmic/. You could certainly register, download whatever data you are interested in, and then query directly.