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Comment: ComBat with repeated measures by ATpoint ★ 4.8k
It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by ATpoint ★ 4.8k
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Comment: Merging EPICV1 and V2 betas by Garbayo • 0
[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…
Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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