Bioconductor 16srRNA

Showing : 16srRNA • reset

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DESeq2 diferentialabundance 16srRNA baseMean

updated 19 months ago by Michael Love 42k • written 19 months ago by PhD_student_microbiome • 0

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Microbiome 16s Deseq2 16srRNA

updated 2.6 years ago by Michael Love 42k • written 2.6 years ago by Katelyn ▴ 10

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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

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Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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