Bioconductor ATACseq

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ATACSeq regionCounts csaw

updated 5 months ago by dineika.chandrananda • 0 • written 2.0 years ago by zgraytho88 • 0

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680

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ATACseqQC ATACSeq

updated 10 weeks ago by danalvoronov ▴ 10 • written 5 months ago by jfmay • 0

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265

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DiffBind edgeR ATACSeq DESeq2

3 months ago Jawahar • 0

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873

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DiffBind ATACSeq

updated 9 months ago by Malcolm Cook ★ 1.6k • written 9 months ago by Nebat • 0

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425

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dba.count DiffBind ATACSeq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by sophie.hfliu • 0

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324

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DiffBind ATACSeq

3 months ago isaromero8888 • 0

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1.2k

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ATACSeq

updated 8 months ago by Noah • 0 • written 20 months ago by Taeim • 0

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109

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DiffBind ATACSeq

7 weeks ago Pierre Lindenbaum ▴ 10

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261

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DiffBind DESeq2 ATACSeq

29 days ago • updated 26 days ago lonn • 0

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277

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DiffBind ATACSeq

4 months ago inna.gur • 0

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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