Showing : Affy • reset
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
12.7 years ago Guest User ★ 13k
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3
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Differences in results analyzing Mouse Gene 1.0-ST using oligo and affy package
affy limma oligo affy limma oligo
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 20
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Agilent Mouse 8x60K array
affy affy
updated 12.7 years ago by 53k • written 12.7 years ago by ▴ 60
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2
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1.5k
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BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 12.7 years ago by ▴ 540 • written 12.7 years ago by ▴ 110
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Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 50
0
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808
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differential expression analysis for 1 vs 1 experiment
affy limma affy limma
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 180
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2
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views
R 2.15.2 trouble
affy limma gcrma affy limma gcrma
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 13k
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1
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1.1k
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affy annotation database
Annotation cdf affy Annotation cdf affy
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 20
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2
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1.2k
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question of justRMA on exon array
cdf affy cdf affy
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 450
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3
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Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 180
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1
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1.4k
views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 40
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2
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1.6k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
12.8 years ago Guest User ★ 13k
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6
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1.7k
views
bout big data set for Affy R packge
affy affy
updated 12.8 years ago by ▴ 600 • written 12.8 years ago by ▴ 30
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0
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758
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Fwd: bout big data set for Affy R packge
affy affy
12.8 years ago 刘伟 ▴ 30
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1
reply
1.5k
views
Building the tomato annotation library(Affy)
Annotation affy Annotation affy
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 10
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4
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1.9k
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AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 12.9 years ago by ▴ 120 • written 12.9 years ago by ★ 13k
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1.0k
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Does the X_laevis_2 cdf show X_laevis gen 1 probes?
Xenopus laevis probe affy Xenopus laevis probe affy
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 10
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2
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1.8k
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 260
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8
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 290
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1
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1.5k
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[combat] UPC availablility
affy frma SCAN.UPC affy frma SCAN.UPC
updated 12.9 years ago by ▴ 600 • written 12.9 years ago by ▴ 870
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0
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808
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Bioconductor Digest, Vol 117, Issue 6
affy affy
12.9 years ago Dick Beyer ★ 1.4k
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843
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Rank Product question.
affy affy
12.9 years ago sai nitin ▴ 10
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5
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1.9k
views
frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 13.0 years ago by ▴ 830 • written 13.0 years ago by ▴ 260
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1
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1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
13.0 years ago Fabrice Tourre ▴ 970
0
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3
replies
1.6k
views
Annotation using the affy package
GO probe affy GO probe affy
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
0
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2
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1.6k
views
New Bioconductor Package: SCAN.UPC
Normalization affy frma Normalization affy frma
updated 13.0 years ago by ▴ 600 • written 13.0 years ago by ▴ 870
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1
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1.2k
views
Reading in of Exon Array CEL files for normalization/ workflow
Normalization GO cdf affy Normalization GO cdf affy
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 180
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NAs in snp.rhs.tests
SNP illuminaHumanv1 affy crlmm SNP illuminaHumanv1 affy crlmm
13.0 years ago maria traka IFR ▴ 30
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3
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1.9k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation annotate affy limma convert Annotation annotate affy limma convert
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 50
0
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1
reply
1.2k
views
AnnotationDBI
GO ChipName probe affy GO ChipName probe affy
updated 13.0 years ago by 68k • written 13.1 years ago by ★ 13k
0
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2
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1.9k
views
creating GSEA files using biomart
affy biomaRt affy biomaRt
updated 13.1 years ago by ▴ 540 • written 13.1 years ago by ▴ 360
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5
replies
1.7k
views
GEOquery-Problem related to importing data set
affy affy
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 130
0
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5
replies
1.8k
views
edgeR query
Microarray affy edgeR Microarray affy edgeR
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 20
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2
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1.2k
views
Cannot construct AnnotationDb for GOStats
GO affy GOstats biomaRt GO affy GOstats biomaRt
13.1 years ago wrighth ▴ 260
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2
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1.7k
views
Affy mas5 scaling
Normalization affy Normalization affy
updated 13.3 years ago by ▴ 210 • written 13.3 years ago by ▴ 60
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1
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1.9k
views
Error: Re: Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Annotation probe affy AnnotationDbi Agi4x44PreProcess Annotation probe affy AnnotationDbi
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 200
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1.1k
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Exonmap & xmapcore covdesc variable problem
affy exonmap xmapcore affy exonmap xmapcore
13.3 years ago Prime, John ▴ 10
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2
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1.3k
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Quality Diagnostics of Affy Arrays using PLM
affy affy
updated 13.3 years ago by ★ 1.2k • written 13.3 years ago by ★ 13k
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0
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1.9k
views
Is there an R package to export genotype data to PED /MAP files?
affy convert affy convert
13.3 years ago Javier Pérez Florido ▴ 840
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2
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1.8k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
13.3 years ago Alogmail2@aol.com ▴ 90
0
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1
reply
1.7k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 13.3 years ago by ★ 13k • written 13.3 years ago by 53k
0
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1
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1.3k
views
arrayQualityMetrics() doesn't work for one-color non Affy arrays
affy affy
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 90
0
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0
replies
950
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XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
13.4 years ago cstrato ★ 3.9k
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votes
3
replies
1.3k
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy xps cdf affy xps
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ★ 13k
0
votes
4
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1.4k
views
frmaTools: error with 'convertPlatform'
cdf affy convert cdf affy convert
updated 13.4 years ago by ▴ 830 • written 13.4 years ago by ★ 4.1k
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0
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1.1k
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how to rank affy probesets by their probe-effect magnitude
probe affy RPA probe affy RPA
13.4 years ago Leo Lahti ▴ 40
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9
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2.4k
views
necessity of moderated t statistic and false discoveries for small predefined gene list?
Cancer affy limma Cancer affy limma
updated 13.4 years ago by ▴ 260 • written 13.4 years ago by ★ 2.0k
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6
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2.4k
views
eset -Affy Mouse Gene 1.0 ST. Array-
affy affy
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 120
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3
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2.1k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 13.4 years ago by ▴ 190 • written 13.4 years ago by 68k
1,805 results • Page 7 of 37
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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