Showing : Affy • reset
0
votes
2
replies
1.3k
views
Affy PhenoData
affy limma affy limma
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 180
0
votes
4
replies
4.2k
views
exprs() in Bioc 2.10
probe affy oligo probe affy oligo
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 30
0
votes
1
reply
534
views
PhenoData
affy affy
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 180
0
votes
8
replies
1.7k
views
Affy data analysis
Pathways GO affy Pathways GO affy
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 180
0
votes
3
replies
986
views
normalizing only 2 affy samples
affy affy
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 360
0
votes
1
reply
1.8k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
13.5 years ago Ekta Jain ▴ 370
0
votes
4
replies
3.0k
views
Copy number analysis
SNP affy SNP affy
updated 13.6 years ago by ▴ 210 • written 13.6 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Copy number analysis
SNP affy VanillaICE SNP affy VanillaICE
13.6 years ago Rob Scharpf ▴ 250
0
votes
4
replies
1.7k
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
13.6 years ago Fabrice Tourre ▴ 970
1
vote
2
replies
8.2k
views
LIMMA - summarization of Illumina probes for same gene
probe affy limma beadarray probe affy limma beadarray
updated 13.6 years ago by ▴ 180 • written 13.6 years ago by 53k
0
votes
5
replies
1.5k
views
how to rank affy probesets by their probe-effect magnitude
probe affy affyPLM probe affy affyPLM
updated 13.6 years ago by 68k • written 13.6 years ago by ★ 3.4k
0
votes
0
replies
1.4k
views
Updated affy package? ReadAffy/ AffyBatch has changed and breaks my pipeline!
Cancer cdf probe affy gcrma AnnotationDbi Cancer cdf probe affy gcrma AnnotationDbi
13.6 years ago Benjamin Otto ▴ 830
0
votes
10
replies
2.2k
views
Reading 5000 celfiles with ReadAffy
affy affy
updated 13.6 years ago by ▴ 110 • written 13.7 years ago by ★ 13k
0
votes
1
reply
940
views
Is anyone using affylmGUI for Affy Exon 1.0 analysis?
Normalization cdf affy limma PROcess Normalization cdf affy limma PROcess
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 50
0
votes
1
reply
1.3k
views
Microarray: correlation and Rgraphviz
affy Rgraphviz affy Rgraphviz
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 10
0
votes
13
replies
2.6k
views
Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ★ 1.3k
0
votes
0
replies
1.5k
views
[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO affy limma GLAD PGSEA GSEABase GO affy limma GLAD PGSEA GSEABase
13.7 years ago Valerie Obenchain ★ 6.8k
0
votes
2
replies
1.5k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 630
0
votes
1
reply
810
views
Saureus.db Files
probe affy probe affy
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 200
0
votes
1
reply
1.0k
views
[Rocky] - LIMMA to identify deferentially expressed genes
affy limma GLAD affy limma GLAD
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 30
0
votes
4
replies
2.0k
views
Summarizing two-channel data (RGList, MAList) for limma analysis
Normalization probe affy Normalization probe affy
updated 13.7 years ago by ▴ 90 • written 13.8 years ago by ▴ 290
0
votes
1
reply
2.4k
views
limma topTable with gene symbols in output: annotate problem
Annotation cdf probe annotate affy limma biomaRt Annotation cdf probe annotate affy
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 290
0
votes
1
reply
928
views
Saureus Affy Chip
probe affy limma convert probe affy limma convert
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 200
0
votes
2
replies
1.3k
views
RMA normalisation of test microarray data to training data
Microarray GO Cancer affy Microarray GO Cancer affy
updated 13.8 years ago by 68k • written 13.8 years ago by ★ 1.9k
0
votes
1
reply
2.0k
views
PFAM gene enrichment test using GOstats and Category
SNP Annotation GO Organism affy GOstats Category SNP Annotation GO Organism affy
updated 13.8 years ago by ▴ 350 • written 13.8 years ago by ▴ 10
0
votes
0
replies
700
views
Bioconductor Digest, Vol 107, Issue 1
SNP Annotation probe affy biomaRt IRanges SNP Annotation probe affy biomaRt IRanges
13.8 years ago Peter Haverty ▴ 20
0
votes
0
replies
931
views
mapping snp array probe to a gene, biomaRt or others?
Annotation probe affy Annotation probe affy
13.8 years ago Xiaokuan Wei ▴ 230
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 106, Issue 21
SNP Microarray VariantAnnotation Annotation cdf probe affy limma PROcess oligo xps SNP
13.8 years ago Jing Huang ▴ 380
0
votes
0
replies
985
views
how to analyze
affy microRNA affy microRNA
13.9 years ago Adrian Johnson ▴ 330
0
votes
2
replies
1.6k
views
arrayQualityMetrics subscript out of bounds error and Harshlight error
affy Harshlight affy Harshlight
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 180
0
votes
1
reply
751
views
Probe level normalization
Normalization probe affy limma Normalization probe affy limma
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 40
0
votes
3
replies
1.2k
views
solution for affy human 500k mapping snp array
SNP affy SNP affy
updated 13.9 years ago by 6.7k • written 13.9 years ago by ▴ 230
0
votes
1
reply
1.1k
views
Affy U133 array CEL files - how can i see individual probe signals?
probe affy probe affy
updated 13.9 years ago by 21k • written 13.9 years ago by ★ 13k
0
votes
0
replies
822
views
\"normalize a subset of affy data\" AND \"R help function\"
Normalization affy Normalization affy
13.9 years ago boczniak767 ▴ 740
0
votes
0
replies
889
views
\"normalize a subset of affy data\" AND \"R help function\"
affy affy
13.9 years ago Guest User ★ 13k
0
votes
4
replies
1.4k
views
MA plots for large number of arrays
affy affyPLM beadarray lumi affy affyPLM beadarray lumi
updated 14.0 years ago by ▴ 740 • written 14.0 years ago by ▴ 360
0
votes
4
replies
1.0k
views
Identifying the genome sequence of an affy probe
probe affy probe affy
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 20
0
votes
1
reply
918
views
miRNA 2.0 Array, Annotation Files how to use it after rma and readaffy
miRNA Annotation affy miRNA Annotation affy
updated 14.0 years ago by 21k • written 14.0 years ago by ★ 13k
0
votes
3
replies
1.3k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 14.0 years ago by ▴ 300 • written 14.0 years ago by ★ 13k
0
votes
0
replies
926
views
Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.0 years ago Benilton Carvalho ★ 4.3k
0
votes
7
replies
1.7k
views
SNP 6 chip
SNP Sequencing affy SNP Sequencing affy
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 210
0
votes
1
reply
1.1k
views
\'mirna20probe
miRNA affy gcrma miRNA affy gcrma
updated 14.0 years ago by 68k • written 14.0 years ago by ★ 13k
0
votes
0
replies
1.5k
views
feature filter for GENE Chip miRNA 2.0 array
Annotation affy Annotation affy
14.0 years ago Guest User ★ 13k
0
votes
2
replies
2.5k
views
Installing packages on R v2.13.2, OSX multiple warning messages
Annotation cdf probe affy gcrma Annotation cdf probe affy gcrma
updated 14.0 years ago by 68k • written 14.0 years ago by ★ 13k
0
votes
0
replies
1.1k
views
input agilent single-channel data (using limma package)
affy limma affy limma
14.1 years ago Gordon Smyth 53k
0
votes
0
replies
7.6k
views
a question about input agilent single-channel data to R ( using limma package). Thanks for your kind help.
affy affy
14.1 years ago liuyang zhao ▴ 20
0
votes
1
reply
1.2k
views
how to get probe ids??
Microarray probe affy Microarray probe affy
updated 14.1 years ago by 68k • written 14.1 years ago by ▴ 40
0
votes
3
replies
1.6k
views
limma: paired analysis & effects on/interpretation of coefficients
GO affy limma GO affy limma
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 4.1k
0
votes
4
replies
2.4k
views
How to merge to two cel objects imported by oligo package
affy oligo affy oligo
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 60
0
votes
2
replies
1.9k
views
Unable to read Affy Mouse Exon 1.0 ST array CEL file
Annotation cdf affy gcrma oligo Annotation cdf affy gcrma oligo
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 60
1,805 results • Page 8 of 37
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
The city by the bay, 1 hour ago
Pittsburgh, United States, 2 hours ago
Barcelona, Spain, 5 hours ago
United States, 6 hours ago
United States, 7 hours ago
Traffic: 1112 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6