Bioconductor BSgenomeForge

Showing : BSgenomeForge • reset

votes

replies

1.7k

views

BSgenomeForge

updated 4 months ago by James W. MacDonald 68k • written 4 months ago by JABEZ RAJU • 0

votes

459

views

BSgenomeForge non-modelorganism unabletofindFTPdir

updated 10 months ago by Hervé Pagès 16k • written 10 months ago by Geetha • 0

votes

replies

639

views

BSgenomeForge

2.0 years ago Bruno • 0

votes

replies

2.8k

views

BSgenomeForge BSgenome

updated 2.2 years ago by James W. MacDonald 68k • written 2.3 years ago by kyliecode • 0

votes

replies

2.3k

views

BSGenomeForge BSGenome

updated 4.4 years ago by Hervé Pagès 16k • written 4.4 years ago by sieminsk • 0

votes

replies

2.2k

views

cleanUpdTSeq BSgenome BSgenomeForge

updated 6.5 years ago by Julie Zhu ★ 4.3k • written 6.5 years ago by danielle.bilodeau • 0

votes

replies

1.5k

views

BSgenomeForge

9.0 years ago • updated 8.8 years ago Vijay Lakhujani • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Awards • All

Popular Question to Assa Yeroslaviz ★ 1.5k