Showing : BioC2016 • reset
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News: Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016 Conference News
updated 8.2 years ago by 4.0k • written 8.7 years ago by 25k
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Comment: limma plotMDS - logFC inverted? by James W. MacDonald 67k
Please don't add to existing posts. If you have a question, start a new post. But anyway, consider this ``` > library(limma) > example("pl…
Comment: limma plotMDS - logFC inverted? by yifan • 0
Hello, James. I found unexpected results in my MDS plot where S6 drifted away from its groups. Is there any way to check whether specific g…
Answer: WARNING: No Bioconductor dependencies detected. by Laurent Gatto 1.6k
Hi Katja, If I understand correctly, you are focusing on the quantitative data. In this case, you won't need to depend on `Spectra`, or…
Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k
Yes, this gives mut vs wt at minute 15 comparing to baseline.
Answer: Annotating DMRs by James W. MacDonald 67k
You could use `ChIPpeakAnno`, or `missMethyl`
Votes
A: msaprettyprint error in R
Log2FoldChange and normalized count values are not consistent?
A: Log2 fold change value in DESeq2
C: DESeq2 output explanation
Comment: [DESeq2] time series strain-specific differences over time
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