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BioNERO
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bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile
BioNERO
6 months ago
Christopher
• 0
1
vote
4
replies
431
views
BioNero - problem with module_trait_cor function
BioNERO
8 months ago
matevz.likar
• 0
1
vote
1
reply
401
views
BioNERO and Cystoscope
#BioNERO
BioNERO
Cystoscope
updated 13 months ago by
Fabricio Almeida-Silva
▴ 40 • written 13 months ago by
Hasani
• 0
0
votes
1
reply
475
views
Filter the GRN networks based on the optimal scale-free topology (SFT)
GRN
BioNERO
updated 13 months ago by
Fabricio Almeida-Silva
▴ 40 • written 14 months ago by
majeedaasim
• 0
0
votes
2
replies
716
views
Data processing with BioNERO
BioNERO
Pviz
16 months ago • updated 14 months ago
zxd95
• 0
0
votes
3
replies
884
views
Issue with module-trait analysis in BioNero
BioNERO
updated 18 months ago by
Fabricio Almeida-Silva
▴ 40 • written 18 months ago by
Biologist
• 0
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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