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BioNERO
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bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile
BioNERO
6 months ago
Christopher
• 0
1
vote
4
replies
450
views
BioNero - problem with module_trait_cor function
BioNERO
8 months ago
matevz.likar
• 0
1
vote
1
reply
408
views
BioNERO and Cystoscope
#BioNERO
BioNERO
Cystoscope
updated 13 months ago by
Fabricio Almeida-Silva
▴ 40 • written 13 months ago by
Hasani
• 0
0
votes
1
reply
488
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Filter the GRN networks based on the optimal scale-free topology (SFT)
GRN
BioNERO
updated 14 months ago by
Fabricio Almeida-Silva
▴ 40 • written 14 months ago by
majeedaasim
• 0
0
votes
2
replies
732
views
Data processing with BioNERO
BioNERO
Pviz
16 months ago • updated 14 months ago
zxd95
• 0
0
votes
3
replies
901
views
Issue with module-trait analysis in BioNero
BioNERO
updated 18 months ago by
Fabricio Almeida-Silva
▴ 40 • written 18 months ago by
Biologist
• 0
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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