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Answer: When to use edgeR or limma
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James W. MacDonald
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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James W. MacDonald
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This support site is meant primarily for helping people with technical questions about using Bioconductor packages. For general analysis qu…
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Gordon Smyth
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limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
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mohammedtoufiq91
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@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
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Gordon Smyth
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Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
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