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Bioc2022
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News:
Bioconductor Scientific or Informatic Technology Advancement Award!
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Bioc2022
Bioconductor
written 24 months ago by
shepherl
3.8k
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593
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News:
Support Site Bioconductor Award
Recognition
Awards
Bioc2022
Bioconductor
2.0 years ago
shepherl
3.8k
1
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887
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News:
Bioc2022 Submissions for talks, demos, workshops and poster now open! Deadline Tomorrow March 29!
presentation
Conference
bioc2022
2.3 years ago • updated 2.1 years ago
shepherl
3.8k
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591
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News:
Bioconductor Long-term Contribution Award
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Bioc2022
Bioconductor
2.0 years ago
shepherl
3.8k
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657
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News:
Bioconductor Award for Outstanding Documentation
Bioc2022
Awards
Bioconductor
Recognition
2.1 years ago
shepherl
3.8k
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648
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News:
Nominations for Bioconductor Technical Advisory Board is open
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Bioc2022
Bioconductor
23 months ago
shepherl
3.8k
0
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0
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835
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News:
BioC2022 Seattle July 27-29 hybrid conference organizing committee
bioc2022
Conference
2.4 years ago
Levi Waldron
★ 1.1k
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657
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Bioc2022
Awards
Bioconductor
Recognition
2.1 years ago
shepherl
3.8k
0
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575
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News:
Junior Developer or New Package Developer Award
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Bioc2022
Bioconductor
24 months ago
shepherl
3.8k
1
vote
1
reply
1.0k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.1 years ago by
shepherl
3.8k
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662
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News:
Bioc2022 In-person attendance lottery deadline this Sunday
Registration
Bioc2022
Conference
23 months ago
shepherl
3.8k
11 results • Page
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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