Bioconductor BitSeq

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3.2k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.0 years ago • updated 8.9 years ago elle ▴ 10

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1.3k

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BitSeq bitseq rnaseq

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sam McInturf ▴ 300

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1.7k

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bitseq spliceR

9.1 years ago • updated 9.0 years ago elle ▴ 10

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bitseq paired samples

updated 8.8 years ago by panagiotis.papastamoulis ▴ 30 • written 8.8 years ago by MariaJoseG • 0

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RNASeq safe BitSeq RNASeq safe BitSeq

11.3 years ago Dave Gerrard ▴ 40

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1.1k

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Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

11.3 years ago Peter Glaus ▴ 70

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1.3k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.1 years ago by Maayan Kreitzman ▴ 30 • written 11.1 years ago by Peter Glaus ▴ 70

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1.5k

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dexseq bitseq spliceR

9.1 years ago elle ▴ 10

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951

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BitSeq

updated 9.0 years ago by Antti Honkela ▴ 50 • written 9.0 years ago by dietmar.pils • 0

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1.1k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.2 years ago by Peter Glaus ▴ 70 • written 11.2 years ago by Maayan Kreitzman ▴ 30

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862

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BitSeq BitSeq

11.5 years ago Fatemehsadat Seyednasrollah ▴ 260

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1.7k

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BitSeq BitSeq

updated 11.5 years ago by Peter Glaus ▴ 70 • written 11.5 years ago by Fatemehsadat Seyednasrollah ▴ 260

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979

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RNASeq BitSeq RNASeq BitSeq

updated 11.3 years ago by Peter Glaus ▴ 70 • written 11.3 years ago by Dave Gerrard ▴ 40

13 results • Page 1 of 1

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180