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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community CAB
22 months ago shepherl 3.6k
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News: Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
bioconductoroversight community CAB
21 months ago shepherl 3.6k
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 11 months ago by 3.6k
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Comment: JoinLayers function for Seurat Object for annotation with SingleR by Bine ▴ 20
Ok thanks, done. Shall I delete this post?
Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0
The address I linked (https://www.dgidb.org/api) does not state 'The previous version of DGIdb can be found at old.dgidb.org until June 1st…
Comment: JoinLayers function for Seurat Object for annotation with SingleR by ATpoint ★ 3.6k
Please ask at biostars.org for Seurat help which is not a Bioconductor package. As said, SingleR is generic as it can start from a matrix a…
Comment: DESeq2 : stat or lfcshrink for GSEA analysis by ATpoint ★ 3.6k
Both are fine, though for many that I talked to the shrunken logFCs are a more intuitive choice and probably a more direct measurement of t…
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150
Hi Daniel, All updated with the dependency dropped. Thanks again for bringing this to my attention. Cheers, Tim
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How to know if I should use voomWithQualityWeights() or not?
Asses fit of variance prior
Comment: DESeq2 - batch, condition and tissue information
Answer: ScRNAseq analysis scran :: quickcluster Error
Comment: Ensembl down???
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