Bioconductor ChAMP

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Bioconductor ChAMP

updated 14 hours ago by ATpoint ★ 4.2k • written 19 hours ago by Macsue • 0

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ChAMP

updated 11 days ago by shepherl 3.9k • written 11 days ago by Galia • 0

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Cha ChAMP

updated 5 days ago by James W. MacDonald 66k • written 14 days ago by e1271094 • 0

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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k

After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…

Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k

Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

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DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

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Popular Question to Robert Castelo ★ 3.3k