Bioconductor ChIPSeqData

Showing : ChIPSeqData • reset

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DiffBind ChIPSeqData

11 days ago Dinesh • 0

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155

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DiffBind ChIPSeqData DESeq2

updated 17 days ago by Michael Love 42k • written 17 days ago by marcusn • 0

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2.0k

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Genome bwamem ChIPSeqData index

updated 14 months ago by ATpoint ★ 4.1k • written 14 months ago by Maka • 0

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792

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ChipSeq ChIPSeqData chipseqDB

17 months ago stacy.genovese • 0

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1.0k

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GeneExpression ChIPSeqData

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by michela ▴ 20

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2.2k

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DiffBind ChIPSeqData

updated 23 months ago by millerh1 ▴ 10 • written 2.5 years ago by sfpacman • 0

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521

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ChIPSeqData

2.5 years ago tom.dean • 0

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1.4k

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ChIPseeker ChIPSeqData

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Morris ▴ 10

8 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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