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Circos
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Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.3 years ago
Peter.Wood
• 0
0
votes
0
replies
927
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
6.7 years ago
Didi
▴ 10
0
votes
1
reply
834
views
package circlize: How to extend circos plot?
circlize
circos
3.8 years ago
Brian Smith
▴ 120
0
votes
1
reply
826
views
R circlize package problem with drawing histogram
circlize
R
Circos
Plots
4.1 years ago
marvel479
• 0
1
vote
1
reply
637
views
Visualizing Orthologs and Paralogs genes
Orthologs
Paralogs
porthomcl
circos
visualizing
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
mictadlo
▴ 10
0
votes
0
replies
550
views
Need help in plotting RNA-seq foldchange values in circos plot
Circos
updated 2.6 years ago by
Michael Love
41k • written 2.6 years ago by
pooja
• 0
6 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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