Bioconductor DEGseq

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DEGseq RNASeqData limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Shaimaa Gamal • 0

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limma DEGseq

updated 9 weeks ago by James W. MacDonald 65k • written 10 weeks ago by mia • 0

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RNASeqData DEGseq

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by sybyun419 • 0

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

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Answer: fgsea significant result

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