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DEGseq
•
reset
2
votes
5
replies
464
views
Create the design matrix
DEGseq
edgeR
RNASeq
5 months ago
Mohammad
• 0
0
votes
0
replies
271
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
6 months ago
Rob
• 0
0
votes
2
replies
351
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 7 months ago by
Michael Love
40k • written 7 months ago by
Paola
• 0
0
votes
2
replies
478
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 11 months ago by
swbarnes2
★ 1.2k • written 11 months ago by
ac.mainul.mmb
• 0
1
vote
4
replies
553
views
How to figure out the FC value from Limma
limma
DEGseq
DifferentialExpression
updated 12 months ago by
Kevin Blighe
3.8k • written 12 months ago by
beslinail
• 0
0
votes
1
reply
587
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 18 months ago by
James W. MacDonald
63k • written 18 months ago by
biomyscience
• 0
0
votes
1
reply
427
views
Meta analysis
DEGseq
Metanalysis
updated 19 months ago by
Kevin Blighe
3.8k • written 19 months ago by
biomyscience
• 0
1
vote
2
replies
503
views
DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq
DESeq2
Designformula
updated 2.1 years ago by
swbarnes2
★ 1.2k • written 2.1 years ago by
Nicolò
• 0
1
vote
7
replies
926
views
how to make a contrast of uniquely DE genes
edgeR
limma
RNA-seq
DEGseq
2.2 years ago
decppced
• 0
0
votes
3
replies
783
views
DeSeq2- design experiment
rnaseq
degseq
5.6 years ago
laksharikrish
• 0
0
votes
1
reply
1.0k
views
Problem with DEGseq/samWrapper
degseq
updated 6.0 years ago by
ab.tsubaki
• 0 • written 8.5 years ago by
jovel_juan
▴ 10
0
votes
0
replies
703
views
Regarding q-value
DEGseq
DEGseq
10.0 years ago
deepika lakhwani
▴ 170
0
votes
1
reply
1.1k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 10.3 years ago by
delhomme@embl.de
★ 1.2k • written 10.3 years ago by
Guest User
★ 12k
0
votes
3
replies
1.1k
views
Analysis of public GEO datasets - NGS
DEGseq
DEGseq
updated 10.7 years ago by
Aliaksei Holik
▴ 350 • written 10.7 years ago by
Guest User
★ 12k
0
votes
0
replies
1.1k
views
NGS public data analysis
Transcription
DEGseq
Transcription
DEGseq
10.7 years ago
Jill Pleasance
▴ 10
0
votes
1
reply
3.7k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 10.8 years ago by
Gordon Smyth
47k • written 10.8 years ago by
Elena Sorokin
▴ 150
0
votes
3
replies
909
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
11.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
881
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
11.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
923
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
11.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
739
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
12.9 years ago
sunghee OH
▴ 50
0
votes
1
reply
885
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 12.9 years ago by
Simon Anders
★ 3.7k • written 12.9 years ago by
sunghee OH
▴ 50
0
votes
8
replies
1.6k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 13.0 years ago by
Naomi Altman
★ 6.0k • written 13.0 years ago by
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.4k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
updated 13.6 years ago by
Ulrike Goebel
▴ 110 • written 13.6 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
835
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
13.6 years ago
Likun Wang
▴ 50
24 results • Page
1 of 1
Recent ...
Replies
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Gordon Smyth
47k
Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…
Comment: Interpret plot from DiffBind
by
Chris
• 0
If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…
Comment: Interpret plot from DiffBind
by
Chris
• 0
Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…
Comment: Extract Limma Adjusted Values for Plotting
by
phelankj
• 0
Thanks, on the normalized values using the same formula?
Answer: Extract Limma Adjusted Values for Plotting
by
James W. MacDonald
63k
You should use `removeBatchEffect` for that.
Votes
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
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Gordon Smyth
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