Showing : DEGseq • reset
2
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5
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464
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Create the design matrix
DEGseq edgeR RNASeq
5 months ago Mohammad • 0
0
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271
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Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq clusterProfiler DEGreport
6 months ago Rob • 0
0
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2
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351
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RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 7 months ago by 40k • written 7 months ago by • 0
0
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2
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478
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 11 months ago by ★ 1.2k • written 11 months ago by • 0
1
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4
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553
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How to figure out the FC value from Limma
limma DEGseq DifferentialExpression
updated 12 months ago by 3.8k • written 12 months ago by • 0
0
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1
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587
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R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 18 months ago by 63k • written 18 months ago by • 0
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1
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427
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Meta analysis
DEGseq Metanalysis
updated 19 months ago by 3.8k • written 19 months ago by • 0
1
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2
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503
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DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq DESeq2 Designformula
updated 2.1 years ago by ★ 1.2k • written 2.1 years ago by • 0
1
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7
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926
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how to make a contrast of uniquely DE genes
edgeR limma RNA-seq DEGseq
2.2 years ago decppced • 0
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3
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783
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DeSeq2- design experiment
rnaseq degseq
5.6 years ago laksharikrish • 0
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1
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1.0k
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Problem with DEGseq/samWrapper
degseq
updated 6.0 years ago by • 0 • written 8.5 years ago by ▴ 10
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0
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703
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Regarding q-value
DEGseq DEGseq
10.0 years ago deepika lakhwani ▴ 170
0
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1
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1.1k
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Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 10.3 years ago by ★ 1.2k • written 10.3 years ago by ★ 12k
0
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3
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1.1k
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Analysis of public GEO datasets - NGS
DEGseq DEGseq
updated 10.7 years ago by ▴ 350 • written 10.7 years ago by ★ 12k
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1.1k
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NGS public data analysis
Transcription DEGseq Transcription DEGseq
10.7 years ago Jill Pleasance ▴ 10
0
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1
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3.7k
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RNA-seq analysis and two-way ANOVAs
edgeR baySeq DEGseq DESeq DEXSeq edgeR baySeq DEGseq DESeq DEXSeq
updated 10.8 years ago by 47k • written 10.8 years ago by ▴ 150
0
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3
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909
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Help with plot comparison
baySeq DEGseq baySeq DEGseq
11.3 years ago Tina Asante Boahene ▴ 100
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0
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881
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DEGseq help
baySeq DEGseq baySeq DEGseq
11.3 years ago Tina Asante Boahene ▴ 100
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0
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923
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FDR (False Discovery Rate)
baySeq DEGseq baySeq DEGseq
11.3 years ago Tina Asante Boahene ▴ 100
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739
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A question on baySeq
Normalization DEGseq DESeq Normalization DEGseq DESeq
12.9 years ago sunghee OH ▴ 50
0
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1
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885
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A question on DESeq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 12.9 years ago by ★ 3.7k • written 12.9 years ago by ▴ 50
0
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8
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1.6k
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Experimental design for RNA-Seq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 13.0 years ago by ★ 6.0k • written 13.0 years ago by ★ 3.4k
0
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3
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1.4k
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
updated 13.6 years ago by ▴ 110 • written 13.6 years ago by ★ 6.0k
0
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
13.6 years ago Likun Wang ▴ 50
24 results • Page 1 of 1
Recent ...
Replies
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k
Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…
Comment: Interpret plot from DiffBind by Chris • 0
If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…
Comment: Interpret plot from DiffBind by Chris • 0
Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…
Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0
Thanks, on the normalized values using the same formula?
Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k
You should use `removeBatchEffect` for that.
Votes
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
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