Bioconductor DESE

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DESeq2 Dese

updated 5 weeks ago by Michael Love 41k • written 6 weeks ago by Léa • 0

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256

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DESeq2 dese

updated 11 weeks ago by ATpoint ★ 4.1k • written 11 weeks ago by Xu • 0

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261

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dese DESeq2

3 months ago pl23 • 0

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406

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dese DESeq2

4 months ago Hugo • 0

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810

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DESe DESeq2

9 months ago Adèle • 0

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Dese DESeq2

11 months ago Asger Mølgaard • 0

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DESeq2 lfcshrink DESe

updated 11 months ago by Michael Love 41k • written 12 months ago by Alina • 0

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1.1k

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DESeq2 Dese DifferentialRegulation differe

updated 7 weeks ago by feather-W • 0 • written 13 months ago by Bernardo ▴ 10

8 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

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Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

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