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DESe
•
reset
2
votes
2
replies
628
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
8 months ago
BioinfGuru
▴ 70
0
votes
1
reply
440
views
collapseReplicates dimension error
DESeq2
Dese
updated 13 months ago by
Michael Love
43k • written 13 months ago by
Léa
• 0
0
votes
3
replies
611
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 14 months ago by
Xu
• 0
0
votes
2
replies
625
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
15 months ago • updated 14 months ago
pl23
• 0
0
votes
2
replies
932
views
Linear Model Fitting and Colinearity
dese
DESeq2
16 months ago
Hugo
• 0
0
votes
5
replies
1.2k
views
DESeq2 analysis
DESe
DESeq2
21 months ago • updated 20 months ago
Adèle
• 0
0
votes
2
replies
2.0k
views
Handling NA's in Deseq2
Dese
DESeq2
22 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.9k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 23 months ago by
Michael Love
43k • written 23 months ago by
Alina
• 0
4
votes
5
replies
2.0k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 10 months ago by
ij283
• 0 • written 2.0 years ago by
Bernardo
▴ 10
3
votes
3
replies
1.2k
views
Merging two plated in R
dese
DESeq2
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.2k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.8k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.2 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.5 years ago
wilfried.guiblet
• 0
0
votes
2
replies
835
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
Dinesh
• 0
2
votes
3
replies
1.3k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
hpapoli
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
drivingdirectionsonline
• 0
Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…
Comment: DeSeq Strategies for run to run Replication
by
Michael Love
43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Votes
Comment: Differential expression analysis using two TCGA datasets
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
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